CI01000189_02097314_02102754 (RCOR1)


Basic Information

Item Value
gene id CI01000189_02097314_02102754
gene name RCOR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 2096812 ~ 2102865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_02097314_02102754.mRNA
AGGACGGTGTTATTTGTTTCAGATCAGAGCAGTTGAGCTGAGTTAGCTTAGCTATAGCGAGCAGCCAGCGAGCCCAAGTTCCTTCAAGCTCTTTTGCGTTTCGCTGTTAAGATGCCTGCGATGTTAGAGAAGGGCACCGCTGAGATATCGGGTAAAAGAAGGGGCAGAAACTCTGTAAATAATCCGACCAAAAGTTTTACTTCAAATGGGAACAGTAACAATTCATGGGAGGAAGGAAGTTCGGGTTCCTCAAGTGATGACGAGCATGGTGCAGGCGGGATGCGAGTTGGACTGCAGTATCAGGCAGTTGTTCCTGATTATGATCCTGAAGTAGCAAAGGCAAGCCAAGAGAGAGATAATCTGGGAATGCTGGTGTGGTTTCCAAATCCGAGCATACCAGAGGCCAAATTGGATGAGTATATTGCAATAGCCAAAGAAAAACATGGGTACAATATGGAGCAGGCATTAGGCATGCTGTTTTGGCACAAACACAACATTGAAAAATCTTTGGCAGATCTTCCCAACTTCACCCCTTTTCCAGATGAATGGACAGTTGAAGACAAGGTGCTGTTTGAACAGGGTTTCAGCTTTCATGGAAAGACGTTTCACCGCATCCAGCAGATGCTTCCAGACAAGTCAATTGCAAGCCTGGTTAGATTCTATTACTCGTGGAAGAAAACGCGCAGCAAAACGAGTGTGATGGACCGCCATGCACGCAAACAGAAGAGAGACAGAGAGGAGAGTGATGAAGAAGGAGAAGAAAATGGTTGCATCTCTCCAGGGGATGCTGAAATTGAGCTAAATAAGGATGAAAAGAAAGAGGGAACATCTGGACTTGAGAAACAAGAATCAAAACCCGCAGTTGTGCAAAAGCCAGCAAATATTGCAGAGAAGTCACTGCATGTTAAGAAGGAGGTACAGGGACTTGCTGGGAGGAACCTACATAGAGCAAAGAAGAAACCTCCTAAAGGAATGCATTTAAACTCAGATGATGTGACAGCAATGTCCAGTAGCGGCCCGGCTGCAGTTAGTGTTCTGAGGCAGCTGGATATGGAGCTCATTGCCATAAAACGACAGATTCAGAGCATTAAACAGCACAATAGTGCCCTCAGAGATAAGCTAGACACAGGTGTGGATGAGTTTAGGCCATCTGAGGCTAATCAGAAATTTAATACCCGCTGGACCACAGAAGAGCAGCTGCTTGCAGTACAAGCTATAAGGAAGTATGGACGGGATTTCCAAGCCATTTCTGATGTGATCGGCAACAAGTCTGTGGTTCAAGTAAAAAACTTCTTTGTGAATTACCGGCGTCGTTTCAACCTGGACGAGGTCCTGCAAGAGTGGGAAGCTGAGCACGGTGTGGAGGGACGCAAGGGTATAGATGAAGAGAAGATGGAGGTGTCATCCGAAGAGGGGACCACCCCGGGGCCTTCAGAAACCCAGACAGAGGTCATTAGCTCTTCTACTCTCCATTTCCCATCAGAACCTCTTAGTTAATGGGCTTTTCCACCAAAATTCCGCCTTAGATTACAGTCAGGCTGAAAATTCTTGCTCTAATTTAAGCATGTTTTTCCTGCATCTGGTTTTGTTTTATGAATCTCATTTGAGAATGATCATCAAATTATCTTTTTCAGGAACCTACGGCAATGGAAACACAGAACCCCTCAGTTTCCTGAGTTCTCCAACAGCGGTCAGTCGAGCTCAGATCAGTTGATGTCGCAGCTGTGCGTTAGAGGCATTAAGGCTTCAATGGCCTCAAGTGAAGCCTCTTCGTAATGGACATTCCTCCTCCCAGCCCCTCCAGCTCTCACCCCCCCTGCTGAACCCAGGACTCTATAACAGGTGCTACCGCATGGGAGCGCAATCTTCACAAAGCTAGGAACTAGGACCATCTTTTTAGTCACTGCCAACAGAAGTAGAGTTTCTGTCTGGTCTCTACCAATCTGGTGCTCCAGCAGTTCTCCACAAATGGTAATTGGTCTGTTTTAGGGGGAATAAA

Function

symbol description
rcor1 Predicted to enable transcription corepressor activity. Acts upstream of or within hemopoiesis and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in eye; head; intestine; and optic tectum. Orthologous to human RCOR1 (REST corepressor 1).

GO:      GO:0044212, GO:0017053, GO:0000122, GO:0003700, GO:1900052, GO:0005634, GO:0003714, GO:0005667, GO:0003677, GO:0030097, GO:0008134

KEGG:

id description
K11829 RCOR1, COREST; REST corepressor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_02097314_02102754.mRNA True 1999 mRNA 0.46 12 2096812 2102865

Neighbor

gene id symbol gene type direction distance location
CI01000189_02080315_02089268 TRAF3 coding downstream 7544 2079637 ~ 2089268 (-)
CI01000189_02066231_02077990 EHD4 coding downstream 18799 2066028 ~ 2078013 (-)
CI01000189_02055740_02060849 SPTBN5 coding downstream 35963 2055740 ~ 2060849 (-)
CI01000189_02034111_02055465 SPTBN5 coding downstream 41347 2033887 ~ 2055465 (-)
CI01000189_02025832_02030031 FOXG1, FOXG1A coding downstream 66781 2025371 ~ 2030031 (-)
CI01000189_02112135_02130703 TECPR2 coding upstream 8273 2111138 ~ 2131275 (-)
CI01000189_02167284_02313164 USH2A coding upstream 64419 2167284 ~ 2313164 (-)
CI01000189_02383475_02386489 NA coding upstream 279701 2382566 ~ 2387123 (-)
CI01000189_02404459_02433659 ESRRG, ESRRGA coding upstream 301594 2404459 ~ 2433659 (-)
CI01000189_02450025_02461432 NA coding upstream 346963 2449828 ~ 2461499 (-)
G380572 NA non-coding downstream 286583 1809958 ~ 1810229 (-)
G380535 NA non-coding downstream 353995 1733475 ~ 1742817 (-)
G380554 NA non-coding downstream 388061 1706507 ~ 1708751 (-)
G380551 NA non-coding downstream 390526 1706061 ~ 1706286 (-)
G380546 NA non-coding downstream 414420 1682150 ~ 1682392 (-)
G380803 NA non-coding upstream 4159 2107024 ~ 2108287 (-)
G380863 NA non-coding upstream 47091 2149956 ~ 2152085 (-)
G380882 NA non-coding upstream 91392 2194257 ~ 2194514 (-)
G381033 NA non-coding upstream 502047 2604912 ~ 2605202 (-)
G381035 NA non-coding upstream 509763 2612628 ~ 2612875 (-)
G380177 NA other downstream 1198372 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 1331435 764674 ~ 765776 (-)
CI01000189_02961166_02963382 NA other upstream 856243 2960570 ~ 2963454 (-)
G381317 NA other upstream 896008 2998873 ~ 3006444 (-)
G382060 NA other upstream 1727762 3830627 ~ 3832613 (-)
G382052 NA other upstream 1782697 3885562 ~ 3892909 (-)
G382153 NA other upstream 2042725 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012178 rcor1 coding NC_007128.7 CM002901.2 29251662 ~ 29271359 (-)