CI01000189_03097932_03102218 (GDF7)


Basic Information

Item Value
gene id CI01000189_03097932_03102218
gene name GDF7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3097682 ~ 3102815 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_03097932_03102218.mRNA
ATGGACTACTCTTTCTGAAAATTAATTTTACTGTTAGCATTTTAAAGTAGGCTACTGTGTTGCAATTTAAACATCGCATTAACAGCATTTGAGGTCTTTTCAACAGTAGATGGCAGTGCGCGCGCATTAAATGGGGACGATTGTGCAAAAGATGGTACAGCATGAAAACAAACTTCAAACTTTTTTGAACTCCAATTCGTCTATTTATGTTATTATTCTTATTTAGAAGAAGAGTATTTGTCAATGTTATATAAAAAACCAATACAATTTTACTAAGAAAATTCTTAGCAAAACAGAATAAGTAGACACCTTTCATTGTTTATTATTAGTTAAGCTCATTCGGTTTAGCATAATTTATTTATATTAAATTGGCATTCTGGCAATAATATTAGTCCACTGACAATGGTATTGGGGATTTGAAAAAAACGTTACCGCTTCGAAATATCTTTCCAACGGGGGGCGCTCTTTGAATACTAAGCAACAGGCATTCAGTGTTACTCACATTCAAGATATTAACGCTATCTAAAGAGCAAAGGGGAGTTTCCAAAGTCATCAAGTCCATCCAACTTTGCCATTTTCGGCCAGAGACCACTGAAAATGACTCCCAAGAAGACTGCCGCTCCCTTCCTATGGTTTTCCTTTTGCTTTGGGAATATTATTGAGGCAGTGGTGCTGGGATCGGTGGAGTACCCCTCTGATAACGGGCTTCACTCACATCTGGATGCGCGCGGTCCTGCAGAAGCCAGCACAAGCTCCCGGAACGACTCCACATCTGTTCATGTTCCGTCTTACATGATCTCTCTGTACAGGACTCTATCAGAACTGGACCGACGGGGAGGCAACGGCAGCCAGACGCGCTCCAGGAGATATGCCAATACAGTGACCAGCTTCATGGACCTGGGACAAGACGAGCCTTCCCTAAAGTTCCATCAGCAGTACACATTCGACCTGTCTGGTCTCTCAAGACTGGACGAACTGATGGAGGTGGAGCTGCGGGTTCTGAGGAGGCCACCGCCTGATGTCTTAAGTTTACTCTCCCGTGGTGGGAACCTGTACCGACTTCTCCTTCACACCTGCTCCCTCCCGGGATCCTCTCACAAACCTCTGCTCCTCACCTCCAGGACCATTGATCTTCTAGATACCGCTTCAGCCACATGGGATGTGTCTGACGTCGGTGCAAGCGTGAAGACCCACCTGAAGTTGCACAGGACCGTGGAAGGCAGCAGGCCGTTGTGTTTCAGCATATCCGCCGTTTCTGATTCAAATAACGAGGTCGTGCATCCCGGGATGCTGGGTCTGAGCCACGAGGATCAGCAGACCCATGAAAGAGCCTTACTGGTAGCCTTTTCTCGAGCTCGGAGGAAGGAGAACCTCTTTAGGGAGATCCGTGAGAAGATAAGGGCCATGAAAAGTCGTAAATTTCCTGCACCGGAGCATGATATTAAAAGTCATCCAAGACATCGGCGGAGGAGACGGACAGCACTAGCAGGTCGTCCTGGTGTAGGACCTGGTACTGGCGGCGGCGGAGGAAAGGGAGGTGGCAGACGGAGAACACGTTGCAGCCGGAAGCCGCTTCACGTGAACTTCAAAGAACTGGGTTGGGACGACTGGATTATTGCGCCACTAGATTATGAAGCTTATCACTGTGAGGGTTTGTGTGACTTCCCGTTGCGCTCACACCTGGAACCGACCAACCACGCCATCATCCAGACTCTCATGAACTCCATGGACCCAGAGTCCACCCCTCCAAGCTGTTGTGTTCCTTCTAAACTCAGTCCCATAAGCATCCTGTACATTGACTCGGGGAATAATGTAGTTTATAAACAGTATGAGGACATGGTGGTGGAGAGTTGTGGTTGCAGGTAGCAATGTGAGCGAGGGGTGAGCTACCCCTGGACCCTATCCGAAAGCTGCCGCTGCCTCATACGCAGAGGCCAAGCACTGCATTGTCGGCAAGATGAAGCAGTCAGAGCTGGTGAGAGGGACAGTGTGTAAATGTGTGACAACGAGCATGTGTGTATGTTCAGATGGTGATAAGACATTGAGTTGTGTTTTAGAAGCGAGCAGAGGACATGTGTGCTGAACAGCTCCAAATTCCCTTACAACACCAAATAAA

Function

symbol description
gdf7 Predicted to enable cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; cardiovascular system; liver; muscle; and pleuroperitoneal region. Orthologous to human GDF7 (growth differentiation factor 7).

NR:

description
TGF-beta=transforming growth factor beta/Radar product

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K20013 GDF7; growth differentiation factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_03097932_03102218.mRNA True 2116 mRNA 0.48 2 3097682 3102815

Neighbor

gene id symbol gene type direction distance location
CI01000189_02986636_02986941 NA coding downstream 110741 2986548 ~ 2986941 (-)
CI01000189_02961166_02963382 NA coding downstream 134300 2960570 ~ 2963454 (-)
CI01000189_02924018_02946613 SH3YL1 coding downstream 151069 2923301 ~ 2946613 (-)
CI01000189_02823407_02846026 ITSN2, ITSN2B coding downstream 251656 2823407 ~ 2846026 (-)
CI01000189_02686987_02689446 NA coding downstream 408047 2686041 ~ 2689635 (-)
CI01000189_03114741_03118058 YY1A coding upstream 11136 3113951 ~ 3118058 (-)
CI01000189_03126316_03126839 NA coding upstream 23297 3126112 ~ 3126999 (-)
CI01000189_03130245_03141782 NA coding upstream 26608 3129423 ~ 3141782 (-)
CI01000189_03165381_03189571 EML1 coding upstream 61651 3164466 ~ 3189571 (-)
CI01000189_03231665_03237461 PKDCCB coding upstream 127975 3230790 ~ 3239196 (-)
G381902 NA non-coding downstream 4247 3093137 ~ 3093435 (-)
G381887 NA non-coding downstream 5369 3090800 ~ 3092313 (-)
G381901 NA non-coding downstream 7626 3089625 ~ 3090056 (-)
G381886 NA non-coding downstream 9128 3088365 ~ 3088554 (-)
G381253 NA non-coding downstream 275724 2821669 ~ 2821958 (-)
G381914 NA non-coding upstream 138466 3241281 ~ 3241515 (-)
G381918 NA non-coding upstream 160939 3263754 ~ 3264236 (-)
G381931 NA non-coding upstream 257024 3359839 ~ 3360241 (-)
G381855 NA non-coding upstream 262499 3365314 ~ 3366132 (-)
G381951 NA non-coding upstream 371409 3474224 ~ 3474437 (-)
G381317 NA other downstream 91238 2998873 ~ 3006444 (-)
G380177 NA other downstream 2199242 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 2332305 764674 ~ 765776 (-)
G382060 NA other upstream 727812 3830627 ~ 3832613 (-)
G382052 NA other upstream 782747 3885562 ~ 3892909 (-)
G382153 NA other upstream 1042775 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012197 gdf7 coding NC_007128.7 CM002901.2 30835076 ~ 30839338 (-)
bowfin (Amia calva) AMCG00004115 NA coding CM030121.1 CM030121.1 33905291 ~ 33912885 (+)