CI01000189_03294767_03307517 (BAHD1)


Basic Information

Item Value
gene id CI01000189_03294767_03307517
gene name BAHD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3294349 ~ 3307855 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_03294767_03307517.mRNA
ATAGAGGCTGTTACAAAAGGCCAAAACAACATTTGCTCATTAAAAAAATTGTTTATTGCACCTACGCCGTTTAGTAATCATGTTTGTCCCTTCCCAATTAAAAATCTTTAAACTCTTGCCAGACCAGAAACCTGATTAGGGTGGCACATAAGGCCACATTTGTGCTGATTTTTCAGCTTTAGTTTACATAGTCGGTTGCATTAATATTAATTAGTAAAGGTTATGAAATCCCTAATGGCTCCTGTACACATAGATTTAATCATAGCGGTTACAGCTTTGAAATTAGTAATTAATAATGCTTTATATTTTCCTTTATAGGTTTTGCATGACAGAGTGTGATGACCCATGCACGGCAGAGGAACTCTTTATGTGGATATAAGAGTGAATCTGCGGACCAGGTGAGCTGTCAGACAACTATGGACAGAACTTGGCCAGAAAAGAAGGCTAAAAAATGCTCTACCCAAAGAGGAAAAGTTAAGGAAATAAAAGGGAAGACCACAGAGAGAGACCGGAAGCTGTACCCCCTCAGGGGACGACATGGATTGGGTGAAGTGAGCGCGCTTAACTGCTGTGTCGTACTGACGCGCTTGGACGAGAGCGAAACGTGTAGGAACAGCATGAAGGGCAAGGAGAAGGAAATGCAGGTGAAGGCGAAAATCTGCAAGTGTCGCAAGAAAACTTGTAAGACTTGCCAGTCAGCGCCTGAACCAAAAAGCAAAGTGAAACCAGATAAATCTGCCTTATACACAGAATTCGTCCTTGAACCTCGTCAGAGACGGCTGGCCTCTCTGAATGCAGAGGCCGTTAACAGTCTGCTGTTGGACAGAGAGGACCCCCAACAGGCATCAAAACTCTCAAAGAAGCAGCAACAGACAAAAGGAGACACTTCTATCTCTAAAGACACAGCGAAAGATAATGATTGTTCTAGAAAAGTCCAAGACAACCGTAAACGCACATGTACCGGAGAGACTGAACAATGTCGAAACCACAAAAAAGCGAAGACGGAGGCTGACGCTATTGATCTACAGACTCTAAACAGTCCTGCTCCCAAGCGCCTGGCTGGTTTAAATGCGGCCGCCCTGCTCAAGCTGACCAGCACGTCCTCTGGAGTGAAGCGCAGAGGTAAAACAGATGGCAAACCGACCGGCGGAGGAGTGCGAGGGAAACCGCTACAGTCTAAATCACGTAAACAGCAGCACAACTTGGCCTGTCAGTCCAAGTTAAAAGTAGCGCAGCAATGCTGCAGCCTCTGCGAGAAGCAAGCCCTCCACACTGAGGCATTGTGGGACGGGAGCACAGGAAGCCATGGCTTTATTAGCCCCAGATATCAGTGCAGATCCATGCTCAGCTTTCCCCTGAAGCCTGTGAAGGAAGAGAAAACAGAGACTGATGTGAAATCATATTACTGCTGTTCCCAGGAGAGATCAGTGGAGTACTGCCATAGACTAGCCCTGTTCCTCGGCCAGAAAACCTTCCCGGAAACCGATGAACATTCTCTGAAGGGATTTCTTCCTTCTCCTCACACGCTGACACATCCAGCTATGCCCATCGGTGCCCATTCCTATCCCTGTTACCCTGGGTACTATGTCCACATTGCCCATCACGGGACTCCGGCGCTTCCCGTAAGCTCAAATCCAGGAAGCCACGCGCCCTCGTCCGTACCCCCACTGGCGATGCGCACTAGTGGGGTCCAGAGACCAAAATTGCTGCCCTCTTCGGTTTCCCATCCTACAGGGATCCCTCATCCGGCGTACTGTAACTCTGTGGGCACCTGCTACGGAGAAGCCTGCAGGCTCAACAGCTATGCCTACAGACCCACGCAACCCATCACTAGCAGGGGCTGCTCGTACAACGCAGGATGCTCCAGCTGCATGCACAAAGTGGAAAAAGAAGACTACTCTTACCCTCTGGATGACCACAGCTCATCCATCACAATGCCTTCTGCCATGCCTCTGTCCATCTGCCCCATCTCCAGTGTGCCTCCACCCACCCAGTCAGTGCCCCACCTGCAGACGCCTCTTTCCGACGCCAGTCGACCCCAGGTGAAGATTAGAGTGGGACGGGAATGCCCTCAGAGGGCCAAGCCGCCCAGTGGCTCTCGTTCTGGGGTGCGGGACTCTGCTGTTTGCCCCCACATTAAGGATGGCCAGCTGGGAGCAGGCCATGGCAGTGGCTCTGCCAAGCAGCCTAAGATCAGCCGTCGCCGGGCAACAAACGGCTGGCTGCCTGTTGGTGTGGCAACAGAAAAGGAAGTATTCATCGCGGGCGAGGAATCAACATCCCTGCGCAGGTGCTATGAAGGAGTGCAGAGAGATGGAGAGGTGATCAAGGTCAGAGACACCGTGCTACTGCGCTCAGGTCCCAGGAAGAAGTCCCTGCCTTATGTGGCCAAAGTCTCTGCCTTCTGGGAAGACCCTGAGTCAGGGGAGCTGATGATGAGCTTGTTTTGGTACTACCGCCCAGAGCACACTCAGGGGGGTCGCAATCCCAGCATGCACTGTGAGAATGAGATTTTCGCATCTCGGCATCAGGATGAAAACAGTGTGGCATGTATTGAGGATAAGTGCTATGTGTTGACATTAGCACAGTACTGTAGATTTTGTGCCTTGGTGAAGTGTCATGAGGAGGGCTTACGCAGACGTAGCCCCCTGGTCCCTCCCTCCGACTATGTAATTCCAGCTCATCGTTGCGTGCCCAACGACATCGATCCCGACCTGGTGTTCGTCTGCCGCCACGTTTACGACTTCCGCTATGGCCGTCTGCTGAAAAACCTGCAGTAGGTCTGAATGGAGCCATACACTGAAACCAGAATCCAAAACGTTATGACACAATCAAAGTCCTATCAACTGGATGGCTACAAGTCTTTAGGGAGTTGTTGTTGTTTTCAATTTTTTTTTTCCTTTAAGATAAATGCTCTCGGCGTAGCACTCCTGAAAAAACGTTTCTTTCAGCTATTATCCCTTGTGACTTTATATAACGGCATTCTGAGCACAACTACCTTGAGTTCAAAGGTACCGATCGCCAAAATGTGATTTTTCACTCCATGAATTTGAGTATTTATTTTTGCAGTTATCTTTTATATTTGCTGAATGAGTGTAAAAAGAAGAAGAAATTAATGCAGGTACATTAACAATGACCTTGAATTATGGAATAGAGCTCTAATATTCCTTTTTTGGTAGTAAACGCACCCTTATTAAA

Function

symbol description
bahd1 Predicted to enable chromatin binding activity. Orthologous to human BAHD1 (bromo adjacent homology domain containing 1).

GO:

id name namespace
GO:0031507 heterochromatin assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_03294767_03307517.mRNA True 3198 mRNA 0.49 6 3294349 3307855

Neighbor

gene id symbol gene type direction distance location
CI01000189_03259755_03261745 PCMTL, PIMT coding downstream 32604 3259357 ~ 3261745 (-)
CI01000189_03255223_03258558 RPUSD2 coding downstream 35791 3254942 ~ 3258558 (-)
CI01000189_03231665_03237461 PKDCCB coding downstream 55153 3230790 ~ 3239196 (-)
CI01000189_03165381_03189571 EML1 coding downstream 104778 3164466 ~ 3189571 (-)
CI01000189_03130245_03141782 NA coding downstream 152567 3129423 ~ 3141782 (-)
CI01000189_03335757_03343285 IVD coding upstream 27518 3335373 ~ 3343285 (-)
CI01000189_03367583_03403144 LTK coding upstream 58930 3366785 ~ 3403144 (-)
CI01000189_03455342_03475831 RPAP1 coding upstream 147376 3455231 ~ 3475831 (-)
CI01000189_03494191_03495519 NA coding upstream 185791 3493646 ~ 3495519 (-)
CI01000189_03506782_03513494 ZNF839 coding upstream 198927 3506782 ~ 3513494 (-)
G381918 NA non-coding downstream 30113 3263754 ~ 3264236 (-)
G381914 NA non-coding downstream 52834 3241281 ~ 3241515 (-)
G381902 NA non-coding downstream 200914 3093137 ~ 3093435 (-)
G381887 NA non-coding downstream 202036 3090800 ~ 3092313 (-)
G381901 NA non-coding downstream 204293 3089625 ~ 3090056 (-)
G381931 NA non-coding upstream 51984 3359839 ~ 3360241 (-)
G381855 NA non-coding upstream 57459 3365314 ~ 3366132 (-)
G381951 NA non-coding upstream 166369 3474224 ~ 3474437 (-)
G381961 NA non-coding upstream 182563 3490418 ~ 3490630 (-)
G381867 NA non-coding upstream 194763 3502618 ~ 3503965 (-)
G381317 NA other downstream 287905 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 330895 2960570 ~ 2963454 (-)
G380177 NA other downstream 2395909 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 2528972 764674 ~ 765776 (-)
G382060 NA other upstream 522772 3830627 ~ 3832613 (-)
G382052 NA other upstream 577707 3885562 ~ 3892909 (-)
G382153 NA other upstream 837735 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000339 NA coding CM030141.1 CM030141.1 12076056 ~ 12090893 (+)