CI01000189_03983572_04013988 (LARP1B)


Basic Information

Item Value
gene id CI01000189_03983572_04013988
gene name LARP1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3982366 ~ 4014133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_03983572_04013988.mRNA
TCCGCCGTGTTTCAAGCTGCTGGCTGTCAACTTGCGCTCTAGCTGCAACAGCTTTCACCGAGTCTTTCTCTTCATTTGCGCTGGAAAACAAATATTGCGGGATAGTGAAAAAATAACAACGCGTGGGCGTTTGCGCTTTTGAACCATGACCACTGAAGTTGCGAGTGACTTGGACGTGACAGTCAGTTGTTTGGGCGAAGGGAACCAAAACAAGTCGGACGCGGATCGACCCAAGAAACCTGATCGAGCGAGCCACGAGGAGGGGCAGCAGGATCCTCCTCAGGTCGACTCTAAACATCAAAAACAGGGGGACATGGAAAGCAAAGCGGATGGGTTAAGCACGGACAGCACGAACGACAAGGAGAACGAGCAGAATGCATCAAGTCACAAAGCAGAAACTGCCAAGAAGAAAGTGATCGAGGCTCCTCCGCCGAAAGTGAACCCATGGACGAAGAGGAACGCATGCCCTCCTAATAATGCCACCAACAGCTCGCTACAAACAGAACCCCAGAGTCCTGCCAAAGTTGTCCGTGCCAGCAAACCCAGATCCAGGAAGACCAGTAAGTCAAGTGACTTCAGTGACATCACAAACTGGCCTACCCCAGGAGAACTCGCCAATAAGGAGTCAGATCCGATAAGTGGACTGTCAAATGAGAAAGAGACAGAGGATGGAGAGGAAACGCACAGCAGTGCCACCCGCAGGAGAGGAGGCTGGAGAAGAGAGAGAGATTTCTTTGATGACACAGCAAGTGTTCGCAGTGAGGGCAGCAATGTGCGTGGAGGCCCGAGGGGCAGGGGCAAAGGTCGCGGCCGGGGCAGAGGTCGTGGACGAGGTCGCTATGATTACTCCCACAGTTACCGGGACTCTTACGTGGATAGGTCCACGGTTCCAGCCGAGTTCGGCACTAACATGATCTATTACTATGACGACGGTAATCGTGTGCAGATGTATACGATTGAGGAGAGTTTGCTTAAAGAATACATCAAACGCCAAATTGAATACTACTTCAGTCTCCCAAACCTGGAGCGTGACTTCTTCCTGCGGAGAAAGATGGATTCAAAAGGCTTTTTGCCCATCTCCCTGATCGCCAGTTTCCACAGAGTCCAGGCCCTCACCACCGATATCAACCTCATTAAAGAGGCGGTGAAGAACAGTGATGTCGTGGAGCTGGTTGATGAGCAGATCCGTAGGAAAGAAGAGCCGGAGCATTGGCCCATCCCAGGTCCCCCTCTAGACTCCCCTCGCACAGATTTCTCCCAGCTCATTCACTGCCCCGAGTTCGTCCCAGGACAGACATTCACCTCCATCAGCACAGTATCATCCTCCCCAGTCAGTCAGCACATGGACGAACCTGCTCTGGTGAATGGCCAAACTAGCGATGACACAGACACAGCTAAACCTCAGTCCAAAGAATCCTTTCCTTCCGACTCAAAAAGCAGCTCTAGTGAAGATGGGAATACCCCAAAAGAGCAGTCCATCAGTCTCTCTGATCCAGATGCCCAGCCGTGGATACAGGTGGAAAAACGACACAGAAACTCCCCTGGAAAAAATAAGGAGAGCACAGAATTGGTTCAATCCTGCCCAAAGCAGCCGCCTGAGGCAGACCAGGAAGAACTGGACTTTCTGTTTGATGAAGAAATGGAACGGCTCGCAGCGCCTCGCAAGAACACCTTTACCGATTGGTCAGATGACGATTCTGACGATGAACTTGACGACCGAGACGTTAACAAGATCCTGATCGTTACACAGACCCCCCCTCACTTGCGGAAACACCCTGGGGGAGATCGGACGGGGAATCGTGTGTCACGTGCCAAAATTACAGCTGACCTTGCCAAAGCCATTAACGATGGACTGTTCTACTATGAACAGGATCTTTGGACAAAGGAAGAAGGACTGCAAGAGTGTGCCAATGCCAAGCTGTTGGCTTCAGATAAATGTCCATACTCAGCAGTAACATGGGAATTTTCCCATTGCAAATGTTTGAATTGCTTTGTGGTTGATAGAAATATGCTGAAATATTTGCTTAAGGATGTGGAGAACTTTAAAAAACTCAACATGATCAGCCAAGACGAATTTGAAACTCTGACCCCTAAACTTCCCATTGACCCCAACCAGGAGGTCCCACCCCCTCCACCATGTCAAACAGATGATTCCAGCATGGCTCATTCTCTCCCCACGGATGTCCCAGAATCCCCCAGTGTCCCCCGTACCCCACGCACACCACGCACCCCTGGAAGACAGGACCCCACCAAAACCCCACGCTTCTACCCTGTCATCAAAGAAGATAGTGGAAACCTTGATGGAAAAACTCCCAGAAAGAGGAAAACCCGTCACAGTTCTAACCCTCCTCTTGAGTGCCATGTAGGCTGGGTAATGGACTCACGAGAACACAGACCCCGCACTTCCTCTATCAGCAGCTCTAATGCGTCTCCATCAGAAGGAGCCCCCGCACTGTCAGGCAGTTACGGCTGCACCCCACAGTCCTTGCCCAAGTTCTGGCATCCATCCCATGAGCTTTTGAAAGAAAATGGCTTTACCCAGCAAGTTTACCACAAATACCGCCGACGCTGCCTCAATGAGAGGAAGCGATTAGGTGTGGGTCAGTCTCAGGAGATGAACACCCTCTTCAGATTCTGGTCCTTCTTCCTCAGAGACAACTTTAACAGAAAGATGTATGAGGAGTTCAAGCAGTTTGCCTTGGAGGATGCCAAGGAGAACTACAGGTACGGACTGGAGTGTCTGTTCCGGTTCTATAGTTATGGACTAGAGCGGCGATTCAGACAGGACATCTTCAAGGACTTCCAGGAGGAGACCATGCAAGACTATGAGAAAGGTCAGCTGTATGGACTGGAGAAATTCTGGGCTTTCCTGAAATACGCAAAGGTGAAGAATCAGCCTATTGATCCCAAACTCCAGGAATACCTCAGCAAATTCAAGAGCATTGATGATTTCAGAGTAGATCCACCAATGACAGAGGAAGGAGTAAGGAGGAAAGCACACTCGTCCTCCACAGGAGATGAGGTGAAACGTAGGCGACACAACTCGACATCATCATCGAAACAGACCCCCATCTCCAAGACATCTTCAGACAATCAGCCAGCCGCTGGAGGGATGGCAAAAACAGCCACGACTGATCAGGCCACTGCCCCAACGGCAACGAAAACCAACAATCAACCATCAGCCAAGGCAGCCTCAACCAATCAGAAACCAGCACCTCTGACCGCCAAGAGCAGCTCGGCTAATGACCCATCTACAAAAGCCCCACCCAAAGAGAATGTGAAAAAGAATACCTCATCAGATGTTCGCAAAGGAGAGGCGGCGACCAGCAAAAACAAAGATGCCCAACAGCCAAAGAAATGAGGCCCTTACTACACTATATACAGTATTTGAGTGTGATTCTAACTCTAGAGCTGTGAAAAGATTTTCAGTGCTGGTGCAGGCTTACGTTTTACACCGTAACCTCGGAAGTGAGCCAGTCAAACCGTTAGAGCAAAGACCAATTGTCAGACTGCTGCATTCACAAACTGAAGAGTAAACCAGAGACGTCTTTGTGTTGTACAAGACACTTTTTCTGGACAGGTTAACTTTCATTAGATTTTTTTTTTCCTTCATTTTTTTTTTCTGCAGTTAATAGTTTCAGAATCAAGTACGCATGGTGAACTTGTTTTGCTGTAAAGTTTACAGAAGATGCATTCCTACATCGAATGCAGTTTTATCACTTTTAAAAATTAATTTTACCTTTGCAAATGCCTTACATTTCAAAAGCAACAAAAAATATATATATATATATTTTAAAGCATTGTCAGCATAAATAATGAATAATCTCTTGGTGTTTAAAAGTGTTTTTAATTTGTGTGTGCATGTCCTGCACATCACACATATTTACTTCATTTATTTTATAAACTCAAAAAAAAAAAAAAAAAAAGATCAAACAAAAAAAAATCTCTAACTTGAACTGAGGTTGACACAAGGTAACACACACTATATAGCTTTTTGCATTTTTTGCTCTTTTAGCTTGTGTAGGAAATATGACAGTGATGGAATACTAAGTTCTTTATGCTTTTATGATTATCTGAGTGTCTGAGCTGAATATCGGAGAAGTACATAGATATCAAGCCAAAGTGGTGAGGGATTGTAAAAAGTGTTAACATCATCAGGAAATACACGATGTTCCTGCTTTTAATTGTTTTTTTTTTTTTTTGCCGTTTACGCCATGAAAGTGGTGATCTCAAAGACGCCACATCTCTAGTTTAGGTGCAGAGTACAGAAAGAGAAAACATATTTGAACTTTTTATTAATTTTGACTTAAATTGGAAAACGTCTGTGTACTTTTAGTTTCTAGGAAATGTTATCTTTTTTTGAGAGGAATTATCCTTCCTTTTAAATTTTGAATCCTATTGGAGTTGAGTTTGAGATAATTTATTGTTTTACTCTCTTTTGAAGACTTAATTGATTACAATCTTTTTTTATTGATATTACAGAGAGAGTATAGATGACCGCAAACATGGTGGCCCAGAGAATAATTTTATTAGCATTTTTATTTTGCAGGTTGCTGATAACATTAAA

Function

symbol description
larp1b Predicted to enable RNA binding activity. Orthologous to human LARP1B (La ribonucleoprotein 1B).

GO: NA

KEGG:

id description
K18757 LARP1; la-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_03983572_04013988.mRNA True 4567 mRNA 0.46 19 3982366 4014133

Neighbor

gene id symbol gene type direction distance location
CI01000189_03980640_03981210 NA coding downstream 1156 3980613 ~ 3981210 (-)
CI01000189_03950993_03958722 NA coding downstream 23644 3950173 ~ 3958722 (-)
CI01000189_03903426_03904603 NPY4R coding downstream 77763 3902934 ~ 3904603 (-)
CI01000189_03699588_03706531 CDK1 coding downstream 275532 3699248 ~ 3706834 (-)
CI01000189_03608917_03613975 FAM175B coding downstream 368391 3608235 ~ 3613975 (-)
CI01000189_04017195_04030340 NRDE2 coding upstream 2888 4017021 ~ 4030340 (-)
CI01000189_04058639_04097730 TTC7B, TTC7A coding upstream 43793 4057926 ~ 4097730 (-)
CI01000189_04120947_04130707 NA coding upstream 106204 4120337 ~ 4130707 (-)
CI01000189_04271632_04393877 GRID1A, GRID1 coding upstream 257499 4271632 ~ 4393877 (-)
CI01000189_04432088_04472364 NA coding upstream 417801 4431934 ~ 4472706 (-)
G382044 NA non-coding downstream 5429 3965576 ~ 3976937 (-)
G382094 NA non-coding downstream 226442 3755718 ~ 3755924 (-)
G382093 NA non-coding downstream 230365 3751722 ~ 3752001 (-)
G382036 NA non-coding downstream 269914 3712227 ~ 3712452 (-)
G381978 NA non-coding downstream 284669 3696886 ~ 3697697 (-)
G382132 NA non-coding upstream 31104 4045237 ~ 4045696 (-)
G382133 NA non-coding upstream 33130 4047263 ~ 4047563 (-)
G382134 NA non-coding upstream 33816 4047949 ~ 4048367 (-)
G382135 NA non-coding upstream 34752 4048885 ~ 4049228 (-)
G382136 NA non-coding upstream 35180 4049313 ~ 4049553 (-)
G382052 NA other downstream 89457 3885562 ~ 3892909 (-)
G382060 NA other downstream 149753 3830627 ~ 3832613 (-)
G381317 NA other downstream 975922 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 1018912 2960570 ~ 2963454 (-)
G380177 NA other downstream 3083926 894220 ~ 898517 (-)
G382153 NA other upstream 131457 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location