CI01000189_04058639_04097730 (TTC7B, TTC7A)


Basic Information

Item Value
gene id CI01000189_04058639_04097730
gene name TTC7B, TTC7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4057926 ~ 4097730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_04058639_04097730.mRNA
ATGGCCCGGAAGAGTAATCCGGTTCATGTTTTTTATGGTCCTGTCCAGGTCTTTGATGTTTCTGTGCTCCGGCTTCGGTCGTGTTTTGGTCAGGAGATGATCTCGGGGAACTTCTGCTGGGGGAGGCCAAACTCCAGCAGTACCTCAAAGAAAACCCCATCAAGCAGGGAGCCACCTGAATACATGCAGGAGGCCAGTCTGATCATGGCTAAGCTATGCTATGTGGAGGGTGATTACAGGGAAGCGCTGAATCAGTATGCCCGTGTGAATCTGGATGAGATGCAGCTGCCTGTCCTGAGGCGTCAGATTTACTGCGGCCGTTATGCAGGTCTTTGTCTGGAGAAAGTGCCCATGGCGTCCCCATCACTGTCCAATCGTAATGCAGACAGAGACCAGGAGATCATCACTTGCTATGAGAAGTCTGGAGACATTGCCCTGCTCTATCTTCAAGAGGTAGAAAAGGCTCTTAGTGCAGGAATTCAGAACCGCAGTCCAAAGCCTGGCCCGGTCACACAGGAACAGGAACTTGGCTACTTCCTAGAGACTGGACTTCAGAGGGCTCATGTTATTCATTTCAAAAATGGTAACCTGACCCGTGGTGTCGGCCGCTTCCGAGAGATTCTCCGAGCCGTTGAGACCAGAACCACTCAGAACCTACGTATGACTATTGCCAGGCAGCTTGCAGAGATCCTTCTGAGGGGCATGTGTGAACAGAGTTACTGGAACCCACTGGAAGACCCCCCCCACCATTCCCCACTGGATGATCCTCTCAGACACACCCCGCACACAAAGGACTACGCCCTCAGCCGCCGCCCACGCATCTACTCAGGAGAGAATTTGTTTTGTCCGCAGGAGAACACAGAGGAGGCCTTACTTCTGTTGTTAATCAGTGAGTCCATGGCTAACAGAGACGCCGTATTGAGTCGAATCCCTGAACACAATAATGACCGAATCATCAGCCTCCAGAGCGCCTCACTGGTGTACGACCTGCTGACCATCGCGCTTGGCCGACGCGGACAGTATGAGATGCTCTCAGAGTGTCTCGAAAGAGCCATGAAGTTTGCCTTTGAGGAGTTTCATCTCTGGTTCCAGCTCGCTCTCTCCCTCATGGCTGCTGGGAAGTCTGCTCGAGCAGTAAAAGTGCTGAAGGAGTGTATGAGACTGAAGCCGGATGATCCCACCATCCCTCTGCTGGCCGTCAAGCTGTGTATTGGAAACCTGCACTGGCTGGAAGAAGGTGAGCGCTTCGCTAAAATAGTGATTGATATGGGTGAGAAGGCGGCTGAATTCAGGGCCAAAGGCTATCTAGCAATTGGTCTTGTCTACAGTCTGAAAGCCACAGATGCATCTCTTCGAGGAATGCAGGAAGAGTATCAGAAAAAAGCACTGAGTGCTTTCCAGAGGGCACAGAGTCTGTCCCCCACTGATCATCTGGCTGTTTTCTACCTGGCACTGCAGCTGGCTGTATCTCGACAGATTCCAGAAGCTCTCGGTTATGTACGCCAGGCGTTACAGCTGCAGGGCGATGATGTTCATTCACTGCACCTGCTGGCCTTGCTGCTGTCAGCTCAGAAACACTACCACGATGCTCTCAACATCATCGAGATGGCCCTCAGCGAATACCCTGAGAACTTCATCTCTTTGAATTGGCTGAACTCAGATCAGCGTGGCCTTCAGAGACCGCAGAGCATGTTTAAAGCTCAAACTGATCTCAGTTCGGGCTGCAGCAACAACGAGCTGTTGAAGAGCAGCCTCAATAAATGGTATCTGCTTCACACACACACCAGCTGGATCTCCTCACACGCTGCCATATCTGATTATAGAAATGCCCATCTGCACTCTCAGTGTCTTTTATTCACAAAGGTGAAGTTGGAGACATTGTGTCGAGGACCAGAGGAGGCATTACTCTCCTGCAAACGCATGCTGCAGATTTGGAAATCCTGTTACAACCTCACCAACCCCAGATGCTTTCCTTTTCTGGCCCTGTTTACATTTTATCTGTTTTGGGTGATCCAGTCAGACAAATGTAATTTGCTGTTTACATCTGCATGTGGCTTCATGGTCACGCTCTTTCTGCAGCCTGGTTCCGTCCATGCCACCTCTATAGCAGCGTCACGGGTGGAACAGGCGCTGTCTGAGGTGGCCTCCTCCCTCCAGAGCAGTGCTCCAAAACAGGGACCCCTCCACCCTTGGATGACCCTCGCCCAGATCTGGCTGCATGCAGCGGAGGTGTATATTGGAATGGGAAAGGCGGCGGAGGCGACAGCGTGTACGCAGGAAGCAGCCAACCTGTTCCCCATGTCCCATAACGTGTTGTTTATGAAGGGTCAGGTGGCAGAGCTGCGGGGGAATGTGGACGAGGCCAAACGCTGGTACGAGGAGGCGCTGTCCATCAGCCCCACCCACGTCAAGACCATGCAGAGACTGGGTCTGATATTGCATCAGCTACAGAGGTACAGTCTTGCGGAGAAGATCTTGCGTGATGCGGTGCAGGTGAACAGCACAGCACATGACGTGTGGAACAGTCTGGGAGAGGTGCTGCAAGCCCAAGGCAATGACGCCGCTGCGACCGAATGCTTCCTTACTGCCCTGGAACTGGAGGCCAGCTGCCCCATCTTACCTTTCACCATCATTCCCCGCACCCTCTAAGACACTCCGCGTGCTCACCACCAACAAAAACCTCTGTCCGAGAGTCGTGCATGAACCACAGCCCTCAATCACACACAAACGCCCAACCTGAAACTTCTCTTCTATCCTGGAATGCCTTTCCCACCCCTCTAAACTTTTTATCTGTTCTCAGATGTGGATCTGCAGAAAAAGAACTCCAATTGACACAGTTGTCAGTGTGAACTTTTCTAGACTGCTTCACACTCTTGGCTTTTTTCTCCTCCCCTCTTTCTTCCTTCTTTCTCTGCTAGAATGTCCTCCTGCTTCTGTACATCGTAGTGGTGCCGCCCATCTTAAAACCCCACTCCCTTCAGCACTCTCTTTGGTCAGTTTCACTCCACTGTATGACTGGACCAAAGAGAAACCTGTACAAGCTGTTGTCACAGTGAAGCGGGTGATTGATGCAGCGGTTTCATCAAACCACAGTGCTTCCTTTTTGCCCCGAAACATGTCCAGAAACATACAATCTCGAGATTCTAGTAGCTGTGTGTCATACGAACCAGTAATAACACTGATGCAGAGACGGTCAAAAGTGTCTATATGTGTGCTGTGTGTTTGTGCAGAGTTAAAATGACGGTCAGAGTGTGTGTGTCCTTTATATGTGTTATTATCCAGAATATGTGGCGTGTGCGTGTGTTTATTTTGAATGGAATACGACGTTACAGTGGATCCCTGTTACACACATGCGTAATAAA

Function

symbol description
ttc7a Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be active in plasma membrane. Is expressed in brain; ectoderm; intestine; and notochord. Human ortholog(s) of this gene implicated in multiple intestinal atresia. Orthologous to human TTC7A (tetratricopeptide repeat domain 7A).
ttc7b Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human TTC7B (tetratricopeptide repeat domain 7B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_04058639_04097730.mRNA True 3362 mRNA 0.51 23 4057926 4097730

Neighbor

gene id symbol gene type direction distance location
CI01000189_04017195_04030340 NRDE2 coding downstream 27586 4017021 ~ 4030340 (-)
CI01000189_03983572_04013988 LARP1B coding downstream 43793 3982366 ~ 4014133 (-)
CI01000189_03980640_03981210 NA coding downstream 76716 3980613 ~ 3981210 (-)
CI01000189_03950993_03958722 NA coding downstream 99204 3950173 ~ 3958722 (-)
CI01000189_03903426_03904603 NPY4R coding downstream 153323 3902934 ~ 3904603 (-)
CI01000189_04120947_04130707 NA coding upstream 22607 4120337 ~ 4130707 (-)
CI01000189_04271632_04393877 GRID1A, GRID1 coding upstream 173902 4271632 ~ 4393877 (-)
CI01000189_04432088_04472364 NA coding upstream 334204 4431934 ~ 4472706 (-)
CI01000189_04572894_04573508 NA coding upstream 475129 4572859 ~ 4573653 (-)
CI01000189_04633635_04652408 WAPLA coding upstream 535905 4633635 ~ 4654286 (-)
G382137 NA non-coding downstream 4434 4053269 ~ 4053492 (-)
G382136 NA non-coding downstream 8373 4049313 ~ 4049553 (-)
G382135 NA non-coding downstream 8698 4048885 ~ 4049228 (-)
G382134 NA non-coding downstream 9559 4047949 ~ 4048367 (-)
G382133 NA non-coding downstream 10363 4047263 ~ 4047563 (-)
G382166 NA non-coding upstream 74789 4172519 ~ 4178416 (-)
G382201 NA non-coding upstream 244378 4342108 ~ 4346215 (-)
G382198 NA non-coding upstream 437828 4535558 ~ 4567288 (-)
G382238 NA non-coding upstream 615408 4713138 ~ 4713451 (-)
G382052 NA other downstream 165017 3885562 ~ 3892909 (-)
G382060 NA other downstream 225313 3830627 ~ 3832613 (-)
G381317 NA other downstream 1051482 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 1094472 2960570 ~ 2963454 (-)
G380177 NA other downstream 3159486 894220 ~ 898517 (-)
G382153 NA other upstream 47860 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location