CI01000189_04271632_04393877 (GRID1A, GRID1)


Basic Information

Item Value
gene id CI01000189_04271632_04393877
gene name GRID1A, GRID1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4271632 ~ 4393877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_04271632_04393877.mRNA
TGTGAGCTCATGAATCAGGGGATACTGGCATTGGTGTCGTCAACGGGATGTGCTGCAGCCAACGCACTACAGTCTCTCACGGACGCCATGCACATTCCTCACCTGTTCATTCAGAGGAATGGAGACGGCACACCCCGCGCTGAGTGCCAGCTCAATCCCAGCCCCGACGGAGAGCGCTACACTCTGGCCGCACGCCCTCCTGTGCGTCTAAATGATGTCATGATCACGCTCGTCTCTGAACTGCGCTGGCACAAGTTCATTGTTTTCTATGACAGCGAGTACGATGTGCGGGGTATGCGTGGATTTCTGGACCAGGCATCTCGAATGGGTTTGGATGTGTCTCTACAGCAAGTTGACCGAAATGTGACAAAGGTCTTTTCTACCCTGTTCAGCACAATGAGGATGGAGGAGCTGAACCGTTACCGGGACACGCTCAGACGGGCCATCCTGCTGCTCAGTCCTCGCACTGCCCAGGTCTTCATACACCAGGCAGTGGAAACGAATCTAGCATCCAAAGATAGTCACTGGGTGTACGCCAATGAGGAAGTTAGTGACACAGAGATCATGGAGCTTGTCCACAGCGCTCTGGGCCGGATGACAGTGATCCGGCAGATCTTCCCCCTGTGGAGGGACACCAACATCCGCTGCATGAGGAACAATCATCGTATCTCCTCGCTGCTTTGCGACCCGCAGGAAGGGTACCTGCAGTCTCTAGAGGTGTCTAGTTTGTACCTGTACGACAGTGTGCTGATGCTGGCCAATGCCTTCTACCGGAAGTTAGAGGACAGGAAGTGGCACAGCATGGCCAGTCTGAACTGCATGAGGAAGTCAACCAAGCCCTGGAACGGCGGCTGGTCCATGCTGGACACCATCCAAAAGGGACGGATTTCTGGGCTCACTGGTTTAATGGACTTCCGAAGCAATGGAGCGAACTCTCATGTCCAGTTTGAGGTCCTGGGGACCAGTTACAGTGAGACGTTTGGAAAAGATGTAAAGCGGCTGGCGACATGGGACTCTGATCGTGGGCTAAATGGCAGTCTGAGGGAGAACCGGGCCGAGCATGGCATGCAGGGAGTTACTCTGAAAGTGGTGACTTTACTGGAGGAGCCCTTCGTAATGGTGGCAGAAAACATTCTAGGTCAGCCCAAAAGATATAAGGGGTTTTCCATAGATGTTCTGGATGCCCTGGCCAAAATTCTGGGCTTTAAGTATGAAATGTATCAGGTGGCTGATGGTAAATATGGATCTCCTCAGGCCAATGGGTCTTGGAACGGAATGATTGGAGAGCTAATTGGAAAGAGGGCAGATGTGGCTATTTCAGCCATCACCATCACTCCGGAACGAGAGAACGTGGTGGACTTCAGTAAACGCTATCTGGATTATTCTGTGGGAATCCTGATGACTAAAACAGAAGAGAGACTCAACATCTTCTCCTTGCTGGCACCGTTTGACCTGGCGGTGTGGGCCTGCATTGCTGCTGCCATTCCTGTGGTGGGTGTCATGGTCTTTCTGCTCCGACGCGTCCAGTCTGTCCGCTCCCAGAATCCTCCTGGGCCCCACCAGCCTGCTTCTGTCACGACGTCCTTCCAAAGTGCCATCTGGATCGTCTACGGAGCCTTTGTACAGCAAGGTGGTGAATCTTTCATGAGTTCAATGGCTCTCAGGATTGCAATGGGAAGCTGGTGGCTATTCACCCTTATTGTCTGTTCATCCTACACAGCCAACCTGGCAGCCTACCTCACCGTGTCCCGCATGGACAACGCTATTCGAACATTTCAAGACCTTTCCAAGCAGACAGAGCTGAGCTTCGGAACGGTGAGAGAGTCTGCTGTGTTCGAGTATTTCAGGGTGAAGGGCACGAACCCCCTGGAGCAAGACAGCACTTTCGCCGAGTTGTGGAGAACTATCAATAAAAATCAGGGACAGGACAACTCTGTGACCTCTCCTGCTGAAGGCATCCGCAAGGTGAAGCGGGATCCGTATGCCTTCCTGTGGGACATGGCGGTGTTAGAGTATGCAGCTCTGACAGATGATGATTGTACGCTGGTGGTCACAGGAAACAGCATGAGCAGCAAAGGATATGGCCTGGCTCTGCAGCACGGCAGCCCCTACAGAGATCTCTTCTCGCAGAAGATCCTTGACCTGCAAGAGAAAGGAGACCTTGACATTCTAAAGCAGAAATGGTGGCCTCGGAAAGGTCGCTGCGACCTGGACAAGCATGCAGAGCCTCAGCCGGAGGGTCGTGCCCTGAGACTGCACAGCTTCGCTGGGGTTTTCTGCATCCTAGCGGCAGGGCTGCTGCTGGCCTGCCTGGTGGCCGCTCTGGAGTCTTGGTGGAACGGGCCACGCTGCCAACGGGCACAGCCCAAAGAGGACAAAGAGATGGATCTGGAGCAGGTTCACCAGCGTTTGAGTGGGCTGATGGAGGACGATCTGGCACACAAGCAGCTGCCAGGTCAGTCTCTGGAGATCTCTGCCCTGGACATGGGCAGCATGCGGCCACAGCAGAGCTCCCAGGAACCCATGAGAGATTTCCCCCCTGGGGCCCTGTCCGTGACTTCGTTCCTTCAGGAGGGTCCTGGGGTCGGCCGCGTGCCCGGACGGAGCCTCCCCCTCCCTCTCAGCAGTTCCACTCTGCCGCCATCCATGCGCTGCAAACACCGGGCGCCCAACGGAGGCCTTTTCCGCCAGAGCCCCGTAAAGACACCTATGCCCATCTCTTACCAGGCAGTGCCCGGGGGACCCATCCCAGAAGCCATTGATCCAAGCCATGGGACCTCTATT

Function

symbol description
grid1a Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Orthologous to human GRID1 (glutamate ionotropic receptor delta type subunit 1).
grid1 Predicted to enable glutamate receptor activity; identical protein binding activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission; modulation of chemical synaptic transmission; and social behavior. Located in extracellular exosome.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05206 GRID1; glutamate receptor delta-1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_04271632_04393877.mRNA True 2784 mRNA 0.55 14 4271632 4393877

Neighbor

gene id symbol gene type direction distance location
CI01000189_04120947_04130707 NA coding downstream 140925 4120337 ~ 4130707 (-)
CI01000189_04058639_04097730 TTC7B, TTC7A coding downstream 173902 4057926 ~ 4097730 (-)
CI01000189_04017195_04030340 NRDE2 coding downstream 241292 4017021 ~ 4030340 (-)
CI01000189_03983572_04013988 LARP1B coding downstream 257499 3982366 ~ 4014133 (-)
CI01000189_03980640_03981210 NA coding downstream 290422 3980613 ~ 3981210 (-)
CI01000189_04432088_04472364 NA coding upstream 38057 4431934 ~ 4472706 (-)
CI01000189_04572894_04573508 NA coding upstream 178982 4572859 ~ 4573653 (-)
CI01000189_04633635_04652408 WAPLA coding upstream 239758 4633635 ~ 4654286 (-)
CI01000189_04657758_04673288 NA coding upstream 263422 4657299 ~ 4673288 (-)
CI01000189_04718699_04724685 NA coding upstream 324570 4718447 ~ 4724685 (-)
G382166 NA non-coding downstream 93216 4172519 ~ 4178416 (-)
G382137 NA non-coding downstream 218140 4053269 ~ 4053492 (-)
G382136 NA non-coding downstream 222079 4049313 ~ 4049553 (-)
G382135 NA non-coding downstream 222404 4048885 ~ 4049228 (-)
G382134 NA non-coding downstream 223265 4047949 ~ 4048367 (-)
G382198 NA non-coding upstream 141681 4535558 ~ 4567288 (-)
G382238 NA non-coding upstream 319261 4713138 ~ 4713451 (-)
G382153 NA other downstream 125548 4145590 ~ 4146084 (-)
G382052 NA other downstream 378723 3885562 ~ 3892909 (-)
G382060 NA other downstream 439019 3830627 ~ 3832613 (-)
G381317 NA other downstream 1265188 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 1308178 2960570 ~ 2963454 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002825 grid1b,grid1 coding CM030139.1 CM030139.1 3699569 ~ 3707678 (+)