CI01000189_04633635_04652408 (WAPLA)


Basic Information

Item Value
gene id CI01000189_04633635_04652408
gene name WAPLA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4633635 ~ 4654286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_04633635_04652408.mRNA
AAGACCTGTCCGACCTCACCACGAAGCCCCTCCCACCAGTCTCCGTTGATCTCCAATTAGAACGCGCCTTCTTTTTCATTTCATCCAATCGGAACTACGTTTGCTGCACATACGCTCAGTGCGCACACATCTGATTGGTCGAGCGGCGTTCTGGTGTGACGCTGGGCTTTACGCCGACGTTGTTGGGGGCGTAGAGGGAGGGGCGACTTTAATGGCGCATCGCAGTCCGACCGATCCAGCTCTCCACAAATAAACAACAGCAGTTCTTCACTATCTGGCCTAATATCTACTTTTTCCAGTTCCACCGCGCTGCAGGCGCGCTTTGCACTTTTGCTCATTGAGCAGATCGGCTGGGCTTTTTTTTAGCGGCTGCTTGGAGCACAAGAGGCCCAGAGGAAAGACGGAGGATCGGTGAGTGTGCAAACATGTAGCCATCTGTTAAATGAACAATGTTTCTGCTCGAAACGTAACTCATTAAAGGGATACTTCACCCAAAAATAAAATAATTGTCATCATTTACTCACACCTGTGTTGCTCCAAACCTGCATGATTTAATTTCTTTCGCAGAACACAAAAGATGATGTTAGGCAGAATGTTAGGTATTGAAAGTGAATGGTGACTGCGACTGACATTCCTCCTGACATCTTCTTTTGTGTTGCTATGAAGAAAAAAGTCAAACGGGTTTGAAATAACATAAAGGTGAGTAAATTATCTTAATATTAGGTGAACTATTCGTTTCATTTAAAGAAGGTGCCTCATCATAAAACGTTCCTGAAATGAAGAAGTTGTGTGCTAGAAATATGCCCTCTGTTGGTTTTGTTTTCTTTTACCTTTTAAACCATCTTAAGTCTTTTTAATATGCTAGCCATGTAAAGCCTAATATATGGAATCTTAGTCAGAAATAAATGGGAAGAGTTTATTGAATGTTTAGACAAAATATTTTTAAAAATGTGCATTTGTGTTTTATATTTTATATCTGATACATCAGACTTTTATGGCCCATATATGGTATGATATAATGAAAAATAGAAATATGGAGCTTACACTTGAAAAGGAAAAAAAAACACCTCAGTTCTTTTCAGAGGTCCAAACTGAGTGAAAATGTGCAATTTGGTGCAGATGTTATTTATTTGGCCAGAATTTAAGATGAAATTCTGATAGCTTGTAATGTAAATCACTGAGACTTTTTATAGCAGTGTATTAAAATATTCAAAAAATGCAAATATCAGCTGCTACTCTACATAGCTCAATAATATGTCTTAGTAATATGACATTTAAATCCTTAGTTTTATGATCAAAGCTTTGTTTTAATTGTGGGGAGCAAAATGTATAATTCAATGATGATTGAGAGATGAACTTTATTTAAAATCATGTTGTATCAAATTTGATTCTTAAATTTTAACCAGATTTTTCAAAAAAAAAAAAAAAAAGTATAGAATAATCAAGTAAACATTGCTTCAGTGGAGTAAATTGTTATCTTGAAATGTAACTAAAAATCATTATAGACTTCACAGCACAAATACACATGTACCACAACCCAGTGGTGGAAATATTTAAATTATACTTAACTTACTAAAATTAGTATGAACTATCAGTTGGAGGGTAGAATGCATGTAGAAGATTGTGTACAACAGGGTTTTTCAGCAAAGGTTTCATCATGTTGGTCTTATAAAAACATGTATCAATTGATTCAGTAGGTTTATAGGGTTAAAATAAACATTTTATTGCATATTTATCTGCTTTAGTTCCATTGTAGCATTTAAAACAAGTATCAATACACAGATCTTATATTTCTTCCTACATGCTGAGATATTGATGTGACATTTAACTTCTCCATGTTTTCTGTTTCTCTATAGATAATATGTAACAAACGTCAACATGACGTCCAGATTTAGTAAAACATATACCCGGAAGGGAGGAGAGGCCAGCTCGAAGTTTGATGAGGTGTTTTCTAACAGGAAGGCTACGCTTAGCACCAAATGGGGAGAGACCACCTATAAGGCACAGTTGGGGGTCAAACGGCCCTCGTTCAAGCCAGAGGTTTCTGAGCTGACTAAACGACCCCGCTTTGACGATGATGACAGCTCAGAGGACCCATTTGGCTTTGACAGCGATGATGAGTCCAAAACAGTCACTTTCAGAGGTACTCCTCAATCTGAGACAGGCTCAGATGCAGCGGAATCTGGGAATGAGCTGTTAAAGACTCAGACAGAAAACCCCAGTGGGGGCACAGCGGAGACCGGAATGGGTACTTCCTCGTTGGGGAGCACCTTGAACATCAGCAGCGGGGTGGTTGGTATGAATAGCCCAGCTCAAACATATCCAGCCTCACCACATGTTGCTGGCACTGTAGGAGCCTGGAGCAGATCCAACGTCACAGCAAGCAAACCAGTCTCCCAGATCTCCAGCTTGAAAATCCACAGTAGAAACATTTCCGATGCCTGGGACTCTTTCGAGGAGGACTCTCCTCCTGGGGCTGGCGAGGGGAGTTCTACCCAAGCTGGGAACTCTTCTGATGGGTTTAAGAGCTCAGAGCAGTGCACCGCTGAACCTGAACCTCCAGTGGAACCTGTTGACTTTGAACAACTTCCGCTTCTTAAACCATCCAGCGACAGAGTCTACCGACGACCACGGAATAAAGGGACGGATAGTTCTGGAGCCGGTGATGCGCCGGTTCCTGCTGTGAGTTCAACACCAGCCGCTGCACCGGTGAAGACCACCAGTGCAGGGGTTGCTGGGAGTTCTGAGGTCAAGCCTGCCGGTCGGGGCCGGGTGAGGGACTACACGGTTCTTCACCCGTCCTGTGTGTCTGTGTGTAATGTGACCATACAGGACTCTATTGAAAGGAGTGTGGATGATTTTGTCGCCCCAGTGCAAGCTGACATGGGAGAGGCGGGAACCTTCAGGAGGAAAACAGACACACAACCTGCCAAGCCTAGCAGGTTCAGACCCACTCAGAGTAAAAGTAAAAAGGAGACAAAACTGGAGTTTTTTGGCTTTGAGGCTCAGGGCACAGATGGAGACGCCACTGCATCCGGCAGCACCAGCTACAAGATCAAATACTTCGGTTTTGACGAGCTGAGTGAGAGTGACAGCGAGGATGAGGACGACTCAGCAGCTAAAGAGAGGAAGAAGAATAAGAAAGCAGCGGCGGAAGCTTTGGCAACCGGCGCGGGCAGTCTTCAGATCAACGACTCGCAGGAGAGTCAACAGAGTCAAAGCAGCCTAAGTACAGATTCTCAGGAGTCGCTGGATGAGACGGGATCTTCAGGCTCACAGAAGGAACGGCATGGAAAGCAAACCGACAAGTCAAAGGAGATCGGACGCAAGATCTTCAGCGGGCCAAAAAAATCTCCTGCTAAAGCCGTATATAATGCTCGTCACTGGAATCAACCTGAGCCGGAGGAAGTGCCTGCTCCTGCTTCCTCTCATACTGTGGCTGTACCTTTGTACACGGTGGTCCAACATGTGAAGCACTTTAATGATGTGGTGGAGTTTGGAGAGAATCAGGAGTTCACAGATGACTTTGAGTATCTGGAGACAGGCCTGAAGAGCACACAACCCCTCAACACACGCTGCCTTAGCATAATCAGTCTGGCCACGCGCTGTGCCATGCCAAGTTTCCGCATGCACCTGAGAGCCAGAGGGAAGGTGGCCCAGGTCTTTAAGATGCTCAGTGATGCTCAACAGCACCCGACAAGGGAGAAATGCAAACAGACGCTGAGCCGTTACTCTGTAAATCTCGTTAGTTCAGTTTACACAGATGCGTCTCTGATGTACATACTGAGCAGAGACCGGCTGAATATGGATCTGGATCGTTCCTGTCTGGAGCTGATGATCAGGCTGCTGGAACTAGAGCAGGACGACTCTGTAGCGGACCAGTTAACAGCTAAAGAGATGAGCCGAGTTAAAGAGAAGATCCGCAAACTCTGCGAAACAGTCCACAACAAGCATCTGGACCTGGAGAACATCACAACAGGTCACTTAGCGATGGAAACGCTACTGTCTCTGACGTCGAAGCGAGCCGGAGACTGGTTTAAGGAGGAGCTGCGCTTACTTGGGGGACTGGACCACATCGTAGATAAAGTGAAAGAGTGTGTGGAGAACTTGAGTAAAGAAGAAGATAAAGAGAGTCTGGTGGCATCACTCTGGGGAGCAGAGCGCTGCTTACGAGTTCTGGAGAGTGTTACAGTCCACAACCCTGAGAATCAGGCGTATCTGATTGCCTACAAGGAGTCCCAGCTCATAGTGTCCTCAGCAAGGGCACTGCATCATTGTGAGCAGATGATACAGCGTTACAGCCGAGAGGTCTCTTCATCAAGCTCCGCCCTCCCGCAGAGTAGTCATAGCAACGTGGGCAAGGCTGTGGAGGATTGTATGAGAGCCGTTATCGGAGTTCTGCTCAACCTCACACATGATAATGAGTGGGGCAGCACTAAAACAGGTGAGCAGGATGGCCTTATACTGACGGCTCTAGACTGCGTTCTTAAGGTCCCACGTTATTTGCCTCAGGAGCAGAGATTCGACATCCGTGTCCTGGGTCTGGGTCTGCTGATAAATCTGGTGGAGTACAGTGCCAGAAACAGACACTATCTGGTGGAAATGGAGCTGGACTTGAGCTACATGATGGAGACGGAGATACACGTGAAGACGGAGAACGACATGAAGACAGAAGGAGTGGAGGACAGTAAGACAGAGGATGCTAAAACAGAGGGCGAGAAGGGACCAACGACACTAAAGTCATCAAATGCCCTGGCTGCTCTGGTTCAGCTCTTCCTTGAAAGGGAGCAAGCAGCTGTGGTAGCTGAGGCGCAGACTGATGATCTCATAAGTGAGGCGCCCAAATCTCAGGCAGACCAGAGCGGCGAGTGGAAGGAAACATCCGGAGAGATCCAGTGGGTCGCCTCAGAAAACAACGACGATGACACAAATGACAAGAAAGAGGAGGAGGAAGAGGAGCTTGACCTCAATAAAGCCCTGCAGCATGCTGGGAAACACATGGAGGACAGCATTGTGGCGTCATACTCAGCTCTTCTACTTGGGTGCCTATGTCAGGAGAGTCCG

Function

symbol description
wapla Predicted to be involved in regulation of chromosome condensation and regulation of cohesin loading. Orthologous to human WAPL (WAPL cohesin release factor).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_04633635_04652408.mRNA True 5064 mRNA 0.46 17 4633635 4654286

Neighbor

gene id symbol gene type direction distance location
CI01000189_04572894_04573508 NA coding downstream 59982 4572859 ~ 4573653 (-)
CI01000189_04432088_04472364 NA coding downstream 160929 4431934 ~ 4472706 (-)
CI01000189_04271632_04393877 GRID1A, GRID1 coding downstream 239758 4271632 ~ 4393877 (-)
CI01000189_04120947_04130707 NA coding downstream 502928 4120337 ~ 4130707 (-)
CI01000189_04058639_04097730 TTC7B, TTC7A coding downstream 535905 4057926 ~ 4097730 (-)
CI01000189_04657758_04673288 NA coding upstream 3013 4657299 ~ 4673288 (-)
CI01000189_04718699_04724685 NA coding upstream 64161 4718447 ~ 4724685 (-)
G382198 NA non-coding downstream 66347 4535558 ~ 4567288 (-)
G382201 NA non-coding downstream 287420 4342108 ~ 4346215 (-)
G382166 NA non-coding downstream 455219 4172519 ~ 4178416 (-)
G382137 NA non-coding downstream 580143 4053269 ~ 4053492 (-)
G382136 NA non-coding downstream 584082 4049313 ~ 4049553 (-)
G382238 NA non-coding upstream 58852 4713138 ~ 4713451 (-)
G382153 NA other downstream 487551 4145590 ~ 4146084 (-)
G382052 NA other downstream 740726 3885562 ~ 3892909 (-)
G382060 NA other downstream 801022 3830627 ~ 3832613 (-)
G381317 NA other downstream 1627191 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 1670181 2960570 ~ 2963454 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002815 LOC107659261 coding CM030139.1 CM030139.1 3358793 ~ 3376168 (+)