XLOC_012008



Basic Information


Item Value
gene id XLOC_012008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 16192479 ~ 16193620 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00024870
CTCCGGTTCATGGGCCGAACCCGAACCGCCACCTTGACGTTGGAGTCGTTCAAATTAGCGTCACCCATAATGTATCGATATATCCACGAGGAGACGTGTTATAATACGACCAAAATGCTTGCTGACAGCCTCGAGTTCATAAAATCAAACTCATCTAGATTTGTCTGTCACCGGAGTCCCGGATAATTCGTGATATCTGAAGCGTGTCGTGTCCAAAATTGGCCAGCATTGTCCTTACCGGGTTGTTTTTCTGCGTTTTGAACGGCACAGTAGAGACATGGtcgctttttaaaaatgtttaaaagaaaagttTGGTGGAATGTCTTGACAGCTGGAGCTTTAGTTGGATCAAAAACAGAGTTGAGAGAACAGCCAACTCCCTCCTGGATTCCTGACACACTCACACTGGGTCAAACTGCAAATGTCAAGACTTTTGTCCGGCAGGAAACCGAGTAACTAATAAGCTGGGTCCAACTTCACGAGCTGATTAAAACAATGGTGCTGCTCTACATTGCCATCCAGTTCAGCAGATCTTCAGAGTTAGCATCCAACATCACGGAGACGAGGCTTTTAGAGAACCAACGAATCCAAGAAAATTAAGATCGGACCGATTTAAGGGCTCCAGCGTGGATGTTACGGTCGTATTAAGCAGCCGCTTTATTTCATGACTGAGCAGCGTGAAGCCGCTGATGTTAACGGTGATCTGGGTAGCC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00024870 True 713 lncRNA 0.46 2 16192479 16193620

Neighbor


gene id symbol gene type direction distance location
XLOC_012007 pnoca coding downstream 59230 16110285 ~ 16133249 (-)
XLOC_012006 NA coding downstream 104544 16077835 ~ 16087935 (-)
XLOC_012005 map7a coding downstream 122574 16051448 ~ 16069905 (-)
XLOC_012004 CR759878.1 coding downstream 293016 15882066 ~ 15899463 (-)
XLOC_012003 ankrd6a coding downstream 415129 15756828 ~ 15777350 (-)
XLOC_012009 hmbox1a coding upstream 104502 16298122 ~ 16324565 (-)
XLOC_012010 kcnk13a coding upstream 142658 16336278 ~ 16342388 (-)
XLOC_012011 tdp1 coding upstream 155210 16348830 ~ 16422654 (-)
XLOC_012012 NA coding upstream 371258 16564878 ~ 16568991 (-)
XLOC_012013 NA coding upstream 539696 16733316 ~ 16741256 (-)
XLOC_012001 NA non-coding downstream 448483 15741501 ~ 15743996 (-)
XLOC_011993 NA non-coding downstream 763641 15415718 ~ 15428838 (-)
XLOC_011991 NA non-coding downstream 887556 15302837 ~ 15304923 (-)
XLOC_012014 CR381576.1 non-coding upstream 658652 16852272 ~ 16852405 (-)
XLOC_012019 CU855697.2 non-coding upstream 1585348 17778968 ~ 17779083 (-)
XLOC_012020 CU855697.1 non-coding upstream 1685974 17879594 ~ 17879709 (-)

Expression



Co-expression Network