G379933


Basic Information

Item Value
gene id G379933
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 678439 ~ 679609 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU434365
ATGTCTTAGTGCGATTGGTAAAATGGTCTCAATTTCACAGCAGTCACTGGTATTATGAAGAAGATTAAAAACTAAGGAGAATTCTGTCCTCCTTTTGGGTGGTGTCACTTGTGAAAACCCACTCCTCTCCCCCCAAAACAGGTGTTGGTGTAATAAAAATTTACAATCCTTTTGTTCTGGTCTTGGTATATAAGGTAAAGTGCAAAGCAGTCAGGGGGGATTTTCTGTAGCCAGAAGCCCCCACACAGTGGTGGACAAGTGTCTTCAAACACTAATCCACCACTGTGTGCATGTGCATTTCAGTTGATGTTATGCATTTATTATTTCTGAATTGGCTTCTAATTGTCCAACTATGAAATTGACATGATACATTTTTACTTGACAAATAAAATGTTATATTTGATTTACTCTGGATTCTTCTGAAATCATTATGACCAGTAGATTATGGAGTCCGTCATTTCCGTAAATCTGCGTCAGGACAGNNCAAGCCAGAGAGCCCCATGAAAGGAGCATATTGGCACATCATGGGACTTTTTGAGTTTGTCTGTTATTGAATTAGCAAGTTGCAGTATCGTGACTAAGAAAACTGTATTTTTGTATGAACAAGCATGTGGCGGTTCGACTCAAATGCATTAGTTAACTCTGCATCCTCTGACTAGATCATAAACTGGCGAATTTATGTCCGTGAGAACGCAGTCGGCCGATGTGAATTTCTCTAAGCGATGATGAGACCGTAATGAACGAATAATTGAAATTATGAGATACCCAGAATAATCAAAAATCAAAATTAATACATAACAAATGATTAATTTCCAATTGGGAACGAAACCTAAGAGTAATAATCATTTAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU434365 True 851 lncRNA 0.37 2 678439 679609

Neighbor

gene id symbol gene type direction distance location
CI01000189_00557254_00592764 CNKSR1 coding downstream 85675 557203 ~ 592764 (-)
CI01000189_00527327_00527614 NA coding downstream 150777 526280 ~ 527662 (-)
CI01000189_00510737_00516326 NIPAL3 coding downstream 162104 509758 ~ 516335 (-)
CI01000189_00506407_00508897 NA coding downstream 169542 506355 ~ 508897 (-)
CI01000189_00496400_00496746 NA coding downstream 181091 495915 ~ 497348 (-)
CI01000189_00703680_00736690 NA coding upstream 23653 703262 ~ 736690 (-)
CI01000189_00744231_00759517 NA coding upstream 64494 744103 ~ 759517 (-)
CI01000189_00764790_00765233 ID3 coding upstream 85065 764674 ~ 765776 (-)
CI01000189_00797964_00824109 MSRA coding upstream 117041 796650 ~ 824109 (-)
CI01000189_00831218_00832634 NA coding upstream 151392 831001 ~ 835086 (-)
G380097 NA non-coding downstream 32328 645288 ~ 646111 (-)
G380071 NA non-coding downstream 72868 605221 ~ 605571 (-)
G380070 NA non-coding downstream 74708 603519 ~ 603731 (-)
G380066 NA non-coding downstream 80997 597120 ~ 597442 (-)
CI01000189_00477967_00490706 RCAN3 non-coding downstream 183690 477673 ~ 492947 (-)
G379930 NA non-coding upstream 2893 682502 ~ 682829 (-)
G379936 NA non-coding upstream 14083 693692 ~ 701193 (-)
G380142 NA non-coding upstream 86410 766019 ~ 766325 (-)
G380144 NA non-coding upstream 88873 768482 ~ 768709 (-)
G380147 NA non-coding upstream 93596 773205 ~ 773517 (-)
G380177 NA other upstream 214611 894220 ~ 898517 (-)
CI01000189_02961166_02963382 NA other upstream 2279499 2960570 ~ 2963454 (-)
G381317 NA other upstream 2319264 2998873 ~ 3006444 (-)
G382060 NA other upstream 3151018 3830627 ~ 3832613 (-)

Expression


Co-expression Network