Gene
RNA
| Item | Value |
|---|---|
| gene id | G381033 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000189 |
| NCBI id | null |
| chromosome length | 4726117 |
| location | 2604912 ~ 2605202 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU435594 | True | 291 | lncRNA | 0.28 | 1 | 2604912 | 2605202 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000189_02469062_02471153 | NA | coding | downstream | 133759 | 2468614 ~ 2471153 (-) |
| CI01000189_02450025_02461432 | NA | coding | downstream | 143413 | 2449828 ~ 2461499 (-) |
| CI01000189_02404459_02433659 | ESRRG, ESRRGA | coding | downstream | 171253 | 2404459 ~ 2433659 (-) |
| CI01000189_02383475_02386489 | NA | coding | downstream | 217789 | 2382566 ~ 2387123 (-) |
| CI01000189_02167284_02313164 | USH2A | coding | downstream | 291748 | 2167284 ~ 2313164 (-) |
| CI01000189_02663877_02665709 | NA | coding | upstream | 57887 | 2663089 ~ 2665790 (-) |
| CI01000189_02686987_02689446 | NA | coding | upstream | 80839 | 2686041 ~ 2689635 (-) |
| CI01000189_02823407_02846026 | ITSN2, ITSN2B | coding | upstream | 218205 | 2823407 ~ 2846026 (-) |
| CI01000189_02924018_02946613 | SH3YL1 | coding | upstream | 318099 | 2923301 ~ 2946613 (-) |
| CI01000189_02961166_02963382 | NA | coding | upstream | 355368 | 2960570 ~ 2963454 (-) |
| G380882 | NA | non-coding | downstream | 410398 | 2194257 ~ 2194514 (-) |
| G380863 | NA | non-coding | downstream | 452827 | 2149956 ~ 2152085 (-) |
| G380803 | NA | non-coding | downstream | 496625 | 2107024 ~ 2108287 (-) |
| G380572 | NA | non-coding | downstream | 794683 | 1809958 ~ 1810229 (-) |
| G380535 | NA | non-coding | downstream | 862095 | 1733475 ~ 1742817 (-) |
| G381035 | NA | non-coding | upstream | 7426 | 2612628 ~ 2612875 (-) |
| G381047 | NA | non-coding | upstream | 45775 | 2650977 ~ 2651299 (-) |
| G381184 | NA | non-coding | upstream | 111094 | 2716296 ~ 2716501 (-) |
| G381185 | NA | non-coding | upstream | 112158 | 2717360 ~ 2717845 (-) |
| G381202 | NA | non-coding | upstream | 131482 | 2736684 ~ 2736957 (-) |
| G380177 | NA | other | downstream | 1706472 | 894220 ~ 898517 (-) |
| CI01000189_00764790_00765233 | ID3 | other | downstream | 1839535 | 764674 ~ 765776 (-) |
| G381317 | NA | other | upstream | 393671 | 2998873 ~ 3006444 (-) |
| G382060 | NA | other | upstream | 1225425 | 3830627 ~ 3832613 (-) |
| G382052 | NA | other | upstream | 1280360 | 3885562 ~ 3892909 (-) |
| G382153 | NA | other | upstream | 1540388 | 4145590 ~ 4146084 (-) |
