G381887


Basic Information

Item Value
gene id G381887
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3090800 ~ 3092313 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU436577
ATAAATGTTGTAGGATTGCGTCCATTTATCTAACAATTCTCTAATAGGTTACATTTTGGTTTGCACTTAAACTAGAACTGCACAATAAAATCCACGACTTTTCTCAAAAGAATTGGCCATTTACTATTTCATAAAGCTTTTCCAGCACGGGGAATCGGCTTGCCAAATTTGTCACACCTGTTTCATGTGTCCCTTCTGAATGTACTATATGCATTATACAGCATTACACCGAACGTAATTACGAAACTGGTGCCCACAAAATACTAAAGACTCATAAAGTACTAACTGTTCTGGTTTCATGCACATGGTTATCAGCAGTTTAATATAGCTGAATGCAAAGGCAGGTTTCATTGCATCAAACTCAGGGTTGGCTGGCTTGACTCATAGTGTGTTTTTCCCATTAAGATTTTCATACATTTCTGCTCATTGTATTTCACTTCACTTCTTCTTAAAGCACATGATTCCACTATTACACTCTGATATTAATGTAAATGCTGTGTTTAAACTGATCTAATTCCCCTATAAACCGAATCAATAGCAATGATGGGCCACCGTGGGGGACAATTCTGGCTCTCTGTAAGTTACACAACCTGAAAAACATTTTCAATACTCCCGTGAGAGCGGGCTTGTGGGATGGGATGCACTGTTTGCTTTTCCTACACTCACAGTTTGTGTCATTGAAGGAGAATGTAGGACCTGAATTATATATATGAATAGTTAATAGCTACAGTATCTGTGCTGCTATAATAAGAAAAATTTTTTTGGAAGACAAATCTCACAACAGCACCAAATTCAGTAGGTTTACATATAGTAGAAAAGATCTATTTCAATTTTAACCCCGGATCAGAGTGTATATCAGATGATGTTAAGTTGGTACAAAAATTGGGAGAGAGGGGAACAAAGAGCAACTATTGCAATGTCAAAACAAAACATAACAAAGACCAGGGAAAAAGAAAATGATCTATAGCAGATGATATTTGGCAGGAAAATACCAGAGTGTCTTTGGAACGATTCTTCATCACCACAAGAGAACCCAAACCACTCTGGAGACGTAAAACAGTAAAGCTTGTTTGCTTTGCCACAATTCAATCCACCCGGGCAGGATTACTCCATTTCCTTCTATGAACTAGCCCTGCCTCCTGGTTTAAATCAAGGATAAGCAAATTAAGGGGCTTTGTCATTCTTTTTGAGAAGCCTGGAAAGGAAGATTAAAGAGACCTGGGCTTACACGGAGAGTCCCGACTCTCAGAGAGAACGGGAAACAGATCAGCTGGAAATATTTACTCTCAGTTTGCTGAGCCACTCTGCAACAAGATGCACCAATTACTGCCGGAATGGTCCACATACAGGACGTCCTGGTACTGAGAAAGACAGATTTCAAATCAACTGAACAAGTTGGTGTGGATGGGCCATGTGTCAGCACTCGATGAGGATCTGTGTGGTGTTGTGCCAAAGCTTGTTCCCCTTTTCTAAAGGAATATCTCACCTAAAAAAATGAAAATTTCTGTCATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436577 True 1514 lncRNA 0.39 1 3090800 3092313

Neighbor

gene id symbol gene type direction distance location
CI01000189_02986636_02986941 NA coding downstream 103859 2986548 ~ 2986941 (-)
CI01000189_02961166_02963382 NA coding downstream 127418 2960570 ~ 2963454 (-)
CI01000189_02924018_02946613 SH3YL1 coding downstream 144187 2923301 ~ 2946613 (-)
CI01000189_02823407_02846026 ITSN2, ITSN2B coding downstream 244774 2823407 ~ 2846026 (-)
CI01000189_02686987_02689446 NA coding downstream 401165 2686041 ~ 2689635 (-)
CI01000189_03097932_03102218 GDF7 coding upstream 5369 3097682 ~ 3102815 (-)
CI01000189_03114741_03118058 YY1A coding upstream 21638 3113951 ~ 3118058 (-)
CI01000189_03126316_03126839 NA coding upstream 33799 3126112 ~ 3126999 (-)
CI01000189_03130245_03141782 NA coding upstream 37110 3129423 ~ 3141782 (-)
CI01000189_03165381_03189571 EML1 coding upstream 72153 3164466 ~ 3189571 (-)
G381901 NA non-coding downstream 744 3089625 ~ 3090056 (-)
G381886 NA non-coding downstream 2246 3088365 ~ 3088554 (-)
G381253 NA non-coding downstream 268842 2821669 ~ 2821958 (-)
G381223 NA non-coding downstream 270034 2804007 ~ 2820766 (-)
G381245 NA non-coding downstream 296451 2793032 ~ 2794349 (-)
G381902 NA non-coding upstream 824 3093137 ~ 3093435 (-)
G381914 NA non-coding upstream 148968 3241281 ~ 3241515 (-)
G381918 NA non-coding upstream 171441 3263754 ~ 3264236 (-)
G381931 NA non-coding upstream 267526 3359839 ~ 3360241 (-)
G381855 NA non-coding upstream 273001 3365314 ~ 3366132 (-)
G381317 NA other downstream 84356 2998873 ~ 3006444 (-)
G380177 NA other downstream 2192360 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 2325423 764674 ~ 765776 (-)
G382060 NA other upstream 738314 3830627 ~ 3832613 (-)
G382052 NA other upstream 793249 3885562 ~ 3892909 (-)
G382153 NA other upstream 1053277 4145590 ~ 4146084 (-)

Expression


Co-expression Network