G381867


Basic Information

Item Value
gene id G381867
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3502618 ~ 3503965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU436557
CTGAGTCCATCGATCACTTTAACTGCTTGAATGCATGCAGGTCATTAACAGCCTTGAAGTGATGTTTATACAAAGGTTTGAGTGTTCAAGAGACATGTTGTCTAATTTGAAATTATGATGTTGGTCTTGTCGACTGTCAGACGATAAAACAGTCAACAACTGTAAACACTGCTGAGACTGCTCCTTACTCGCTACAAAGTAAGCAGGTTTGAATTTCCCTGTTCCTGAAACTTTGCCCACAGGCCATTAAATGATTATTTCATTTACCTGAAGTGGCTTGAAGGAAGTTGTTGCATTTCCTCTCACAGCCACATAATGGGCAGCAGACATTGCTTTCATCATTAAAAATTAACGAGCATCACCCTACCATCCTAGGTTTTGGAAATTAATGTGGAAAAATACTGGAAAATGTAGTAGAATTTTTGTACTGCCTGCTTTTCCCCTAATGTTAAAATAATAATACTAAATAAACATACTAAACATGGGAGCCATTTGTGTAAAAGGCTGTTTATATGTGTGTATTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU436557 True 526 lncRNA 0.37 3 3502618 3503965

Neighbor

gene id symbol gene type direction distance location
CI01000189_03494191_03495519 NA coding downstream 7099 3493646 ~ 3495519 (-)
CI01000189_03455342_03475831 RPAP1 coding downstream 26787 3455231 ~ 3475831 (-)
CI01000189_03367583_03403144 LTK coding downstream 99474 3366785 ~ 3403144 (-)
CI01000189_03335757_03343285 IVD coding downstream 159333 3335373 ~ 3343285 (-)
CI01000189_03294767_03307517 BAHD1 coding downstream 194763 3294349 ~ 3307855 (-)
CI01000189_03506782_03513494 ZNF839 coding upstream 2817 3506782 ~ 3513494 (-)
CI01000189_03517928_03524647 VSX2 coding upstream 13318 3517283 ~ 3524712 (-)
CI01000189_03546199_03556875 NA coding upstream 42234 3546199 ~ 3556875 (-)
CI01000189_03557950_03558676 DTD2 coding upstream 53843 3557808 ~ 3558676 (-)
CI01000189_03608917_03613975 FAM175B coding upstream 104270 3608235 ~ 3613975 (-)
G381961 NA non-coding downstream 11988 3490418 ~ 3490630 (-)
G381951 NA non-coding downstream 28181 3474224 ~ 3474437 (-)
G381855 NA non-coding downstream 136486 3365314 ~ 3366132 (-)
G381931 NA non-coding downstream 142377 3359839 ~ 3360241 (-)
G381918 NA non-coding downstream 238382 3263754 ~ 3264236 (-)
G381998 NA non-coding upstream 116909 3620874 ~ 3621089 (-)
G382003 NA non-coding upstream 134764 3638729 ~ 3687279 (-)
G381978 NA non-coding upstream 192921 3696886 ~ 3697697 (-)
G382036 NA non-coding upstream 208262 3712227 ~ 3712452 (-)
G382093 NA non-coding upstream 247757 3751722 ~ 3752001 (-)
G381317 NA other downstream 496174 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 539164 2960570 ~ 2963454 (-)
G380177 NA other downstream 2604178 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 2737241 764674 ~ 765776 (-)
G382060 NA other upstream 326662 3830627 ~ 3832613 (-)
G382052 NA other upstream 381597 3885562 ~ 3892909 (-)
G382153 NA other upstream 641625 4145590 ~ 4146084 (-)

Expression


Co-expression Network