G382153


Basic Information

Item Value
gene id G382153
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4145590 ~ 4146084 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU436879
ACCATCTCAGCAGAGCTGAAGACCACCACAGCAGAGCAGATGGGATTGAAGATCCCCATAGCTGAGCAGAAGACCACAACAGCAGAGAAGGGTCTGAAGATCCCCATGCCGGAGCAAATGACCACCACGGCAAAACAGCCGGGTCTGAAGATCCCCACGGTGAAGCAGAAGACTACCACGGTAGATCAGGCGGAGCTAGAGACCACCATGGTGGCGCAGAAAACTACCACAGCAGAGCAGGCGGGACTGAAGATCCCCATGGTGGAGCAGACGACCACTACAATGAAGCAAGTGGAAAATAGAGAGCACAGAGAGGTTACAAACGGTCTCTGTGGCTGTTGCAGAGGGCTTAGAGAAGGCCTCCTTGGCCAATACAGGACGAGCAGAGAGTTCATAGATGACCTCCATGCTCGAGTCACAGCAGACAGAAAGTTCAGGGATGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU436879 True 444 TUCP 0.54 2 4145590 4146084

Neighbor

gene id symbol gene type direction distance location
CI01000189_04120947_04130707 NA coding downstream 14883 4120337 ~ 4130707 (-)
CI01000189_04058639_04097730 TTC7B, TTC7A coding downstream 47860 4057926 ~ 4097730 (-)
CI01000189_04017195_04030340 NRDE2 coding downstream 115250 4017021 ~ 4030340 (-)
CI01000189_03983572_04013988 LARP1B coding downstream 131457 3982366 ~ 4014133 (-)
CI01000189_03980640_03981210 NA coding downstream 164380 3980613 ~ 3981210 (-)
CI01000189_04271632_04393877 GRID1A, GRID1 coding upstream 125548 4271632 ~ 4393877 (-)
CI01000189_04432088_04472364 NA coding upstream 285850 4431934 ~ 4472706 (-)
CI01000189_04572894_04573508 NA coding upstream 426775 4572859 ~ 4573653 (-)
CI01000189_04633635_04652408 WAPLA coding upstream 487551 4633635 ~ 4654286 (-)
CI01000189_04657758_04673288 NA coding upstream 511215 4657299 ~ 4673288 (-)
G382137 NA non-coding downstream 92098 4053269 ~ 4053492 (-)
G382136 NA non-coding downstream 96037 4049313 ~ 4049553 (-)
G382135 NA non-coding downstream 96362 4048885 ~ 4049228 (-)
G382134 NA non-coding downstream 97223 4047949 ~ 4048367 (-)
G382133 NA non-coding downstream 98027 4047263 ~ 4047563 (-)
G382166 NA non-coding upstream 26435 4172519 ~ 4178416 (-)
G382201 NA non-coding upstream 196024 4342108 ~ 4346215 (-)
G382198 NA non-coding upstream 389474 4535558 ~ 4567288 (-)
G382238 NA non-coding upstream 567054 4713138 ~ 4713451 (-)
G382052 NA other downstream 252681 3885562 ~ 3892909 (-)
G382060 NA other downstream 312977 3830627 ~ 3832613 (-)
G381317 NA other downstream 1139146 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 1182136 2960570 ~ 2963454 (-)
G380177 NA other downstream 3247150 894220 ~ 898517 (-)

Expression


Co-expression Network