CI01000191_00371716_00372843 (CHMP1A, CHMP1A.S)


Basic Information

Item Value
gene id CI01000191_00371716_00372843
gene name CHMP1A, CHMP1A.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000191
NCBI id null
chromosome length 1012698
location 371716 ~ 373871 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000191_00371716_00372843.mRNA
ACACACTCTTCCAGCTAAAATTCACGTCCAAGCAGTTGGAGCGACTGGCTAAAAAGGCGGAGAAAGACTCCAAATCAGAGCAGGCTAAAGTCAAGAAGGCTCTCCAGCAGAAGAATGTGGAGTGTGCGCGAGTTTACGCCGAGAACGCTATCCGCAAGAAGAACGAGGGCCTGAACTGGCTGCGTATGGCGTCTCGTGTCGACGCCGTGGCCTCTAAGGTCCAGACGGCCGTCACTATGAAGGGGGTGGCGAAGAACATGACGCAGGTGACCAAAGCTCTGGATAAGGCTCTGAACTCCATGGACCTGCAGAAGGTGTCGGCCGTCATGGACAAGTTTGAGACGCAGGTTCAGAATCTGGACGTTCACACCTCGGTGATGGAGGACTCCATGAGCTCGGCCACCACGCTGACCACGCCGCAGGAGCAGGTGGACGACCTCATCCTGCAGATCGCCGAGGAGAGCGGCCTGGAGGTGGAGGATCAGCTCAGCCAGCTGCCGGCGGGAGCCTCGTCGCTGGGGGAGACGTCAGCACGAGCGCAGGACAAAGAGGACCAGCTGTCCAGACGGTACTGCACTACACATAAACACACACTTCTCACACCACTGTCACCTGCCCATCAAATCAGCTGGAACTAGGCCTGCACTGTAGATCAAAACATAAACCCCGCCCCCGAGAACACGCAACAAAGGGGGCGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGATAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGCGGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGTGTGTTTTTGCTCACACCCAAATAAGGGCAAATTTGACAAGCTATAATAAATGGTCGAAATCTCATGTTAATGAAGTGCGTCACACAAGCTGTTTAAGACCTTATGGCTGTGATTCGACGACAAATGCTAGACTGAGACACTCTTCTCTGCTCCTCAAATACATGTAGTGTAGTATAGTGTGTATATATATATATATATATAAAATGTAGTGTTTCTTGAGTAAAGAAAATGCTGTACATATTCAAAAAAACATTTCTTTGTTTGCCATTGCATTGCAAACAAGCAGAGATGTGTCTGATATTTAATTCATGATATAGGTGGGTGGACAGTTAAAGGATCCAATGGTGTAATGATTGGTTAATTATGTGCAGAACCCACAGACGGACGTAAAGGGTGACCGATAGTGATGATTCACTCTGAATCCAAACTCATTTATACTTGAAACGGATTCTTATTTGCCGGAAACACATTAAAAGCTCGACGGGTTACTGTTTGAAATTGAAGAAATTAAGATGTAAATATCAAGACAGTAAA

Function

symbol description
chmp1a Acts upstream of or within cerebellum development. Predicted to be located in endosome; membrane; and nuclear matrix. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 8. Orthologous to human CHMP1A (charged multivesicular body protein 1A).

GO:

id name namespace
GO:0039702 viral budding via host ESCRT complex biological_process

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000191_00371716_00372843.mRNA True 1666 mRNA 0.47 5 371716 373871

Neighbor

gene id symbol gene type direction distance location
CI01000191_00322010_00323524 NA coding upstream 48126 319328 ~ 323590 (+)
CI01000191_00249601_00250989 NA coding upstream 120675 249428 ~ 251041 (+)
CI01000191_00152475_00164919 SLC1A2B, SLC1A2 coding upstream 206730 152475 ~ 164986 (+)
CI01000191_00377204_00378580 SLC10A3, P3 coding downstream 3121 376992 ~ 378876 (+)
CI01000191_00388849_00403381 NA coding downstream 14978 388849 ~ 403381 (+)
CI01000191_00433171_00437043 NA coding downstream 59300 433171 ~ 437508 (+)
CI01000191_00449927_00467117 PTPRB coding downstream 76056 449927 ~ 467117 (+)
CI01000191_00467451_00474334 PTPRB coding downstream 93580 467451 ~ 474334 (+)
G383550 NA non-coding upstream 31190 225710 ~ 340526 (+)
G383601 NA non-coding upstream 116703 233413 ~ 255013 (+)
G383498 NA non-coding upstream 248398 57440 ~ 123318 (+)
G383554 NA non-coding downstream 5791 379662 ~ 379980 (+)
G383645 NA non-coding downstream 39851 413722 ~ 414101 (+)
G383649 NA non-coding downstream 105351 479222 ~ 479466 (+)
G383667 NA non-coding downstream 172871 546742 ~ 546941 (+)
G383670 NA non-coding downstream 179612 553483 ~ 553781 (+)
G383928 NA other downstream 431621 805492 ~ 820465 (+)
G383931 NA other downstream 468200 842071 ~ 842135 (+)
CI01000191_00975691_00993520 NA other downstream 610495 975691 ~ 994595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024342 chmp1a coding NC_007136.7 CM002909.2 37435335 ~ 37441657 (+)