CI01000192_00124135_00167418 (SCUBE3)


Basic Information

Item Value
gene id CI01000192_00124135_00167418
gene name SCUBE3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 123577 ~ 167829 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000192_00124135_00167418.mRNA
AGGGACCTTGTTTCCCGACTGAACGGTGGTTAGTCTGGCTTCTGATGCGTTTTTTTGCACTCTCTCCCCGACTGGATCCAGCTCTTATGTCAAGGTCTCACTCAGACGCCCTATTATTACCCCTCTGTTCCCCAAAACCTGCCAGCAGCTCCGCAAATGAGATGTCTGGCTTGTCTGACGGGCCCCGAAGACAAAACTGAAAGAGTAAAGCGCAGGCCACAGAGGCCAGAGGGGTGCGGTGAATCTGTCAGGGTCGCACATTTCCCCCACAGGAATCCAGATGGAGCGCGGCAGCCGAAGGCTGGGTTGCGGTCGCTGCCGCTGCCGGCTAGGTCGCTCTCTCACAAGCTCTAATAGGCCAGAAAGCCACAATAAAACAAGCTGAACTTATTAATGAGCCCCTGTTGAGCGATGGGCTGGAGTCACAGAGTAATTGATGTGGCCTACCCACAATCCCCTGAGGAGATGGTAACTGTTGGCATGATAAGAGAAGAGGAAAGGAGTGTCCAACAGCAGCCACTGCAGCCACAGCTGTTACCCAATGGTAAATATGTCAATTTCTCTAGCTTGATTCCTATTGGCTACTTCTTTCCACAATTCCTAAGTGTTGGGATGCAACCAAAGCAGAGTTGTTCATTTATGTATTCTGACACGAGTGAAACGGGTTTTGAATGGGTCTCGGCATGCACAGAGACGTGTGCGGTCAATAACGGAGGCTGCGACAGCACGTGTCATGACGCCGTGACTGGAGTGCGCTGCAGCTGCCCGGAGGGATTCACCTTACAGCCGGACCGCAAGACCTGCAAAGACATTGATGAATGCCGCATGAACAACGGAGGGTGTGACCATGTGTGTAGAAACACGGTGGGCAGCTTCGAGTGCAGCTGCAAGAAAGGATACAAACTTCTGACCAAAGATGAGAGGACGTGCCTAGATACAGACGAGTGCTCATTTGACCGGACTTGTGACCACACATGTGTCAACTCACCTGGAAGTTTCCAGTGCTACTGCCACAAAGGTTACATCCTCTACGGCGTGGCTCACTGCGGAGATATTGACGAGTGCAGCATTAACCGGGGCGGCTGTAAATTCGGATGCGTGAACACTCTGGGCAGTTACGAGTGTACCTGCCCTCCTGGTTACAAACTGCACTGGAACAAGAAGGACTGTATCGAGCCCGTGAAATGTGCGTCCAATCTGGTGGCCCCCAAAGCCACCCTCACTTGCAGTAAGATGGGGAAAAAAGAGAGCTGCTCTCTCACATGTGCGTCCAAAGCACATTATCTATCAGAATCAGACAACAGTTATTCCGTTAGCTGTGGAATACCCATCCTGCGAGGTAAATCCCAGAGCAAATTAAACACAAGCAGCATCCAGAGCTGCATAGAGACTCAGGCTCCTCCAGTGAAGCAGACGACATCCTTTCGGATCAAGAACGCCAAATGCCACCTGCACCCGAAGCATAAGGGGAGGGCAGAGGACAACGGCAGACAGATCGGGCCAGGTGGTCAACCATGCAACAACTGCCTAGTCACATTTGTTAACCTGAAGTGTGACTCGTCTAAGAAGGCCAAAGGGCGTCGAGCACGTAACCCGTCAAGCAAAGAGGTCACACGCATCACTCTAGAGCTGGAGGCCGAAGTCAAGCCAGGGGAAACCACTGGGAACTGTAACATGATGTGTCAAAGGCAGCGCATGGAGCAGCAGATGAAGTCGTACATTAAAGCGCTGAAAAAGTCCATTAACCAGGAGCGTTTCCTCATCCGCGTGGCTGGATTGGAGTATGAGGTCGCACAGAAGCTCCCCCAGGCTGCATTGAGGCAGGAGAACTGCGGACCAGGCCGAGAGAAAGACAGCGGCCGCTGTGTCAGATGTTTGCCTGGGTCATACTACCATGGTGAGCAGGAGCGCTGCGTCCAGTGCCCACCTGGAACGTTCCAGGAGCGTGAAGGTCAGCTGGCCTGTGACCTTTGCCCTGGAACAGACCGCCATGGCCCACTAGGGGCCCGCAACATCACATCATGTGCAGGTCAATGTCCACCAGGGTATTTCTCCAGCGATGGGTTCAAGCCCTGTCAGTCGTGCCCCCTGGGAACGTACCAGCCCGACCCAGGACGAACTCTTTGTTTCCCCTGTGGAGGAGGGCTTGGTACCAAAAGAGAGGGTGCCAGCTCCTTCAATGACTGTGAGGTCAAAGGTCATTATTATAACACCTCAGTTCATCGTTGCATCCGCTGTCCTCATGGAACCTACCAGGCTGAGTTCAGACAGAATTACTGCATCTCCTGCCCTGGAAACACCACCACAGACTTTGACGGGGCCATCAGCGTCTCTCAGTGCAAGAATCGGGAATGTGGGGGTGAAATAGGAGAGTTCACCGGATACATAGAGTCCCCCAACTATCCAGGAAACTACCCAGCCAATGTAGAGTGTGTCTGGACCATCAACCCTCCACCCAAACGCAAGATTTTGATCGTGGTTCCAGAGATCTTCCTCCCATCTGAGGATGAATGTGGAGACGTCCTAGTAATGAGGAAGAACTGGTCAGCAACCTCCATCACCACCTATGAGACATGTCAGACATATGAGAGGCCGATCGCATTCACGGCCCGATCGCGCCGCCTCTGGATCAACTTCAAATCCAATGATGTAAACAGTGCTCGTGGGTTCCAGATTCCATACGTCACTTATGATGAAGACTATGAGCAGCTGGTTGAAGACATTGTAAGAGATGGAAGACTTTATGCCTCTGAAAACCATCAGGAAATACTCAAGGATAAAAAACTGATTAAAAAACTGTTCGATGTGCTGGCTCACCCAAACAATTACTACAAGTACTCACATCGGAACTCCACGGAGATGCTCCCGCGTTCGTTCATACGTCTCATCCACAGCAAAGTCTCCGCCTTCCTGCGTCCATACAAATAGTCCAAAAGCGCCGTCCGCATCCACACACCTCCAGTCACCTGGCCTCGAGTCAACGGGATCCTACACACATTTAAAGGAAATACACAAGCACACACATATTCAACAACACACACACAACCACACTATGCAGATTTCAGATGTTTCACTTTACCTTTTACTTTTCGTTTTCTTGTCCGTCATCTCTGAGGGGGAAAAAAGCTTCTGTGTAGTCTACATGTAACGCAATGAACGTGTTTCCTTTCTCTACGTGTCGGTCACCGTTCTGTGCCGTGTCGATGTTTTTGTTCGCTCATATAAACGTTTGCACGCTCAGTCCTGAGGCGTCCCGTAGAGGAAGACGATGGTTTGGGTGGTCCCACAACCACCCGAAAGAGTTTAAACACACGCCTGGTTTTCATAGACACGATAAAGAGCGTGTTGTACAGACAAAAGAAAGTTGTAGCATGTCAAAGAAAAGAAAATCTATTTGTCGAACTGGAGCTAGCTGTGATTGTGCTTTAAAAATAGGCTTCTTCCCAAGTTCCAGCTCTCGTAAACTCTACTAGTTCTCAGAATAAA

Function

symbol description
scube3 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000192_00124135_00167418.mRNA True 3486 mRNA 0.51 19 123577 167829

Neighbor

gene id symbol gene type direction distance location
CI01000192_00116033_00116872 NA coding downstream 6705 115839 ~ 116872 (-)
CI01000192_00169090_00206672 SCUBE3 coding upstream 1140 168969 ~ 206672 (-)
CI01000192_00252038_00254509 NA coding upstream 82723 250552 ~ 254509 (-)
CI01000192_00315657_00323729 STK35 coding upstream 147744 315573 ~ 325189 (-)
CI01000192_00345708_00354498 NA coding upstream 177434 345263 ~ 356428 (-)
G384247 NA non-coding downstream 52111 42296 ~ 71466 (-)
G384279 NA non-coding upstream 118423 286252 ~ 287782 (-)
G384286 NA non-coding upstream 144489 312318 ~ 314443 (-)
G384329 NA non-coding upstream 157646 325475 ~ 325699 (-)
G384331 NA non-coding upstream 158818 326647 ~ 326991 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022610 scube3 coding NC_007134.7 CM002907.2 41313084 ~ 41585776 (-)
bowfin (Amia calva) AMCG00013786 scube3,LOC106566910 coding CM030125.1 CM030125.1 42893266 ~ 42936143 (+)