CI01000192_00252038_00254509


Basic Information

Item Value
gene id CI01000192_00252038_00254509
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 250552 ~ 254509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000192_00252038_00254509.mRNA
CTCCTGAAAGACCCGTGTCACTACCTGACTCGCACTTTTTGTGCGATGCCAAAAAGTGACACCTGGCCAGGGGGCGTTGCCATTGAATCTGTGTCTGGTATGGACAGTGCAGGAAGCTGTGATAGCGTGCTCAGCATCAACTCTGGATTTAGTGATGACAGTCTGGAGCACCTTTCTGCTGAGGAGAGAGCATGCCTTATGTTTCTGGAGGAGACCATTGAGTCTCTGGAGGTAGAGGAGGACAGCGGTTTGTCTAACGACGAGCCCGATGGCCCATCTAATGGCCTGGAAGGAAAAACTGCTCATCACACATCCATCTACCAGAACAATACTGAGGAGCTATCAGCCCATGAGGATCCAAACAAAGTGATTGGAAGAGATCATAAACCACCTCAGAAGTACCTTGTGCCAACCCCATTGCTCCTTGCCAGTGGGAATGCTAAGATAATCAGCAAACCAATGGAATCATCTCACATAGAAGCACCTGTGGCATTTATTGATGCACCTGATGGGTTCAGATCAAGCCCTGACCATCAACAACCTGGACGGACAGTTTCTGAAAAAGCTGCTTTGAAAGTAGCAACTGATAAACCAAGAATTGGACTATCAAGTGATGTTGTGGACTTGCCACCTTCTTTCATACCTGAACCTCCAGTTAGAACAAGCTTGCCTAGTGACTCTAAAGCCAAAGATGGCGTTCATAAAAGTTTGGATGTGAAGTCTCAGACAAAGCAGCAGAAAGTTTCCTCAGAGGTGCCGCTGGAATTCATTCCTCCACCCTCAGACTTCATGGATGAACCAACCAAGAAGATAAGCCTGAATTATTTGCCACCACCTCCACCTGCTTACGATGAGCCACCAGAATGGATTCCCGAACTCCCCAAAATGGAGCCGCATGTTTCTGGTGGATCCATCAAGCCAACCGAGGTTACCAAATCAAAGAGTGTGGACCCAGAAACGTCAAGAGGGCCATTATCCCACAATGATATCGAAAACCTGCGCAAGAAGGCCTCCGTGAAGAAAGCACCTCACTTGACACCGTTAATGGTTACGCAACATTCTGCAGCAGACAAAGTGAATACACCTTCGCCATCATCAGAACATGTTCCTGCTGTGCCAAAAGAGTACAGCGACACCAAAAACCCACCAGCTGTGGCACCCAAACCCAAGAAACTCCCATCTAATATCATCATCAAAAGCCACAAAGACACCGGGACCACGCATCCGTTACTTCTGCAGAGCGAGCGCACTCAGATGGATCCCCAGAAGATCCGAGTGGAGGCTTTGAAAAAATTGGGCCTGCTGAAGAACGAAGAGGTTGAAACAGGCCACGGCGTATCTCCCTCTCATTCACCAACGTTCAAAAATAAAGCTCGTCCACAGTCTCCATGTAACCCAACAGCACATGTAGAACCCATGCAAGAACTATCTAGACTATCTGAAAGTCCCGTACCAGGGGACATGCAACTACGTGCAGACACTCTAAAGCACCAAGACACAAAAAGCAGGGAAGGTTCTTTGAAGAAGCAACCAATAAGGTCCTACGAAATCAAATCAGCATCCCTGGAGCGCACAGGGATTGGAATGGTCATTGAACCCATGCCACGGATGACAAACCCAGACAGGACCCATGTTGAGTTGTCGCCAGGTCAGTTACGAAAGAGTCAAGCTCGACCTTCATCTCTAGGTAGTGCAAAGGACTTTGGTATTGGCCATCTGGCTGATGATTCAACCAAATCGCTCCACGCTGCTGTCGTTCAGCCAGGCAACGATGCCCAAAAGTTGCCCCGCTCCAATGGAATAAGCGTGATGATCTCCCCGCACGGTAAAAATGGCGAGAACCGACGGGAAGCCTTGAAGAAACTGGGATTACTGCGGGACTAATAGATGGTGGCCTTTCTCTGGGAAGTTATTTCACAGTTTATTTTGGGTATTTGGACCATTAGCATTGAAAGGAAGAATGCTGAAAATGTCTCAATGAAATGGACTTTGACATCATTCAGGATGCTTTTGGTTTCGGCTTGGTGGTCAATTAGCATCCTTAAGTACCTTCTTAGTAATTAATACAGTTTAATATACGCACTTTCTTCTTAATTGTTTTGGTAAGGCTACATCCACATGAATCTGGATGAATTTGAAAATAGCATTTTCATTTCAAAACGCTGTCCATCCATCCATCCATCCATCCAAAAGTTGATCGTCCACTCGGAAACATCTGAAAACACAGGAATGCTAAATGAAGATTGTACAACTTAACATTTATCCTATCTTGCTACTGGCTTTCATAGTTTTATCTCTTAAGTGTGTCACAAGTAAAAATGTGTCATCATTTTGAAATACCTTCATTTTCAAAGGCCATACTAAAACTCGAAAATGCCATTTTAAAATGGATCCACTTGGGAAAAGCTCTGTTTTTGCTGGACAAAAACATTGTTTCAGTGTGGGCCAAAACATAGAGATGCCTCAAATTTCCTCAGAAGATGTGTCTTAAAATTTGTCCTGATTAATGTGGATGTAGCTTAAGAAAAGGAAATGTAAATACATTTTATTTTGGCACAGAATTAAGATAATTATGGCTTCCAGCTCACTTTCACTTTTTGTATTATGTAAAATGTAAATGTAGTTTGCAGTATTTTCCTCCTAAAGAATTGAAACATTGCATTCCAACAAGACGAATATTCAGTTATTCTATATTCTGATTGTTTTTCAGTGGCTCAAATCTAATCGTTGGTGTATATATTTCTTTGTGCCGTTCTCACTTTTTAAAAAACTTTTAAATAAAAATAAAAGTTGTTATTCTTGTAAAAGAACACTCTCTTCATAAACATGAATACATGCCAGTAATTAAATTCATAATATTTTTCATATTTATGAGGAATTCTTGTTGAAGGTTTAGATTACACTGAAGAGTTCAGACATCTACATTTTGGAGGAGTTGAGGAAAATCTGTAAATATGATACGTAGGCCTGTTAAAGTGTTAGGTTGACATGACTAATTCAAAAATAGGATCCTGTGTGGATCCATGAAATGTTTGGAGTCAAGTTCACTGCACTCGTCTCTGACGCACAAATACCGATCCATGTTTTTCTTGTCAACAGAGTCTTGCTGAGGTAACATTCTGAGAGTTCCTTTCGCAACATCAGCTGCTTCTTTCAGACAAGGCAGGAACTCGTCAAACCTGTCCGAGACAGGAGGGTTTTGTGATCTGGGTGGTTAATGACCTGTTTGTCTTTGTCATCAACCATTTAAGCCTGCAATGAGTTGAACTGATCAGGTTTTCAGCTCATTTACGTGCTTCGTCAAGCATAAGAATATCATTTGTCATTTAAACAGGTGCAGGAGTTTATTTTACAAAATATCATAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000192_00252038_00254509.mRNA True 3370 mRNA 0.42 3 250552 254509

Neighbor

gene id symbol gene type direction distance location
CI01000192_00169090_00206672 SCUBE3 coding downstream 43880 168969 ~ 206672 (-)
CI01000192_00124135_00167418 SCUBE3 coding downstream 82723 123577 ~ 167829 (-)
CI01000192_00116033_00116872 NA coding downstream 133680 115839 ~ 116872 (-)
CI01000192_00315657_00323729 STK35 coding upstream 61064 315573 ~ 325189 (-)
CI01000192_00345708_00354498 NA coding upstream 90754 345263 ~ 356428 (-)
G384285 NA non-coding downstream 28792 121263 ~ 221760 (-)
G384283 NA non-coding downstream 55097 119718 ~ 195455 (-)
G384247 NA non-coding downstream 179086 42296 ~ 71466 (-)
G384279 NA non-coding upstream 31743 286252 ~ 287782 (-)
G384286 NA non-coding upstream 57809 312318 ~ 314443 (-)
G384329 NA non-coding upstream 70966 325475 ~ 325699 (-)
G384331 NA non-coding upstream 72138 326647 ~ 326991 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022613 si:ch73-184c24.1 coding NC_007134.7 CM002907.2 41629503 ~ 41651759 (-)
mexican tetra (Astyanax mexicanus) G137043 NA unknown NC_035911.1 CM008314.1 33547355 ~ 33550978 (-)