G388606


Basic Information

Item Value
gene id G388606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000203
NCBI id null
chromosome length 933177
location 677074 ~ 828020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU444861
GTAAAAAGTAAACTTAATTCAAGATACATTCTCTGAAAACAGGTCTCATTTTGTTTTGATATTTTAACTGGAAAACGAAACAAAAACACTGATTCATTTGCAGTGAAAGACGGGTGGAGAGGGTGAAACGGTATCTGAGGTGTGATTTGGGATTTGTGGATGCTGTAAAAGAAAGCTCTGTGTGGAAAGCCTGTATCTGTGCTATAAATATGTGAGGGCGGAACTCACTCTGCATACAGAGCCCATCTGTGCAGTTCTTGGACTGGAGCACCGTTCCCTCGCAGTCCTTCCCGCCGTTCTTGGGGGCCGGAGCGCTGCACTCCCGCCGTCTCCAGTGGGTGCACTCCGTCCCACACGGCGACCATTTGCTCCACTCCGTCCACAGGCCATCCACTGGACACAGAGGGTTACAGGCCAGTTTCTGGATGGCTTGACCCTCACAGATGGCTCCTCCGTTCAGCGGCGCCGGGTTGGTGCAGCTGCGCGTCCTCTTCTGAAAGCCACGCCCACAGCGACTGCTACACACTGACCACTCGGTCCATGTCGACCAACCGCCGTTCACGTAGACGATGACGGTGGCTGTTGTGCTTCGCCGTTTGGCCACGATGTTCTTGGCCACGCAGGTGTAGTTGGCGGTGTCGGACAGACGGGCCTGTTTGATGATCAGGTTGTGGTCGATGGTGATGTAGAAGTTTCTGTCGTCCGCAGGGTCGATAATCTCCTCGTTTTTCAGCCACTCCACCTCAGCAGCAGGTATTCCTTCTGGCGGGCGGCACTGGAGAAGCACTTCCTGTTCGAGTGACACTTCCTTTCCCAGAGGCTCCTGGTCAAAGGTTTTCCTGAGATAGGCGATCCGGACGTGGGCCTTACGGCTCTTGGTGGTTCCCGCGGAGCTCCAGGCCACACACTGACACCAGAAATCCTCCAGACCGAACAGTTCCTCCACCTGCTGACGGGTGATCTCGATACTGGCCTCCCGAACCACCAAACCGGAGGTCTCGTCCACGCGCTCCTCCACCATGTGCTCCTTCTGATGGACCCACTCGCTGTTGCACTTGAAGTAGATCTGCGTGGCGGGCGTGGCCTTGCAGTACAGGTTGACGGGCTTGTTCTTGACGATGTACGCCTCCTCTGGCTCCATCAGGAAGTGCGGGAGAGGCTCGGGCGGGTCCGAGGGGAACGTCTCCGGGAGTTCGCCCAATCCCAGATAGTCATCATCTTGAGCCGCACCGATGTTGATAAGCGATAAAATACTAAAAATCAACACAGTGATCATCTGCGGTAAGAATCCCGATCCGCCTCGTTCTCTTTTCGCAGTCTTTTTACTTCTTCCCATCGTATAAACAGTCGAAACAAGGCAAAAATCCGCCGTCAGGTGAAATAATCAGAGAAGCCTCTGGAGATGTTGTTTATAGTAAAACCAACGAAATCAAAGACTGTGGCGGAGAGTCGGTTATTTGCGGAGGGAAATATTGGTCGAATCCGTTGGTTTTTACCTCAGCGCACTCTTCTGACAGACAGCGGCCACCAACGCCCGTCAAACACATATGTTTGGGATTAAATATCCTCAGTTTGTCCTCTTCTGTGCAGTTTTTCTCTCAAGGCTTCACGAAATGCTGTAAATTAGCCGTAAACAGGTAAAAATCAGCTCTCCTGAGGTGAGCTCATGTTCAGTATCGGCGTCTGTCAGTGAAGTTCCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444861 True 1702 lncRNA 0.53 7 677074 828020

Neighbor

gene id symbol gene type direction distance location
CI01000203_00612664_00618559 NA coding downstream 58242 612573 ~ 618832 (-)
CI01000203_00599048_00599578 NA coding downstream 77113 598954 ~ 599961 (-)
CI01000203_00521819_00541791 NA coding downstream 134138 521481 ~ 542936 (-)
CI01000203_00483836_00497619 RFX3 coding downstream 179260 483719 ~ 497814 (-)
CI01000203_00369523_00370422 NA coding downstream 304776 367861 ~ 372298 (-)
CI01000203_00868664_00881343 BMPR1BB, BMPR1B coding upstream 40112 868132 ~ 881343 (-)
CI01000203_00929195_00932784 NA coding upstream 101043 929063 ~ 932784 (-)
G388524 NA non-coding downstream 198841 470428 ~ 478233 (-)
G388548 NA non-coding downstream 210380 460433 ~ 466694 (-)
G388547 NA non-coding downstream 217420 459321 ~ 459654 (-)
G388534 NA non-coding downstream 269157 407675 ~ 407917 (-)
G388658 NA non-coding upstream 191 828211 ~ 831261 (-)
G388608 NA non-coding upstream 23459 851479 ~ 864003 (-)
G388610 NA non-coding upstream 30076 858096 ~ 920213 (-)
G388686 NA non-coding upstream 41207 869227 ~ 873848 (-)
CI01000203_00294049_00335783 AKT2, AKT2L other downstream 360468 293775 ~ 335783 (-)
CI01000203_00287087_00290157 NHLRC3 other downstream 389744 285712 ~ 290157 (-)
G388454 NA other downstream 458149 216789 ~ 218925 (-)
G388477 NA other downstream 504810 171163 ~ 172264 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001792 unc5c coding NC_007121.7 CM002894.2 1052591 ~ 1107558 (+)
bowfin (Amia calva) AMCG00010091 LOC108435138,LOC105014579,LOC106585820 coding CM030129.1 CM030129.1 13643088 ~ 13675666 (-)