G388608


Basic Information

Item Value
gene id G388608
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000203
NCBI id null
chromosome length 933177
location 851479 ~ 864003 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU444863
NNNATTATATAAAATAACACACAGGAAAAAAACTGATAAAAGAGTGTTTTCCAACAAAATGATGGAAATATTAATGTGTTTAAAGCTTAATTTCTCATCAGGCACTAATTTACAGACTCTCATTAATCTACACAGCTGAGGGTCCACTAGTTTAAGCATTAATGGAGGGAAAACATCCAAAAGAAATTTCAAAAAAACAAATAAAAAGGAAGGAAAGAAGAGTAGTGTGTAGAAGAGTTGTGTATGTGACGTGTGGCGGCCGTGAAGAGATGTATGTTTATGATAATAACCTCATAAAGCCCGTCTTTGCTTGGGATGAACGTATTTAATTTCTTGTGTGTGTTCGGGAAGTTGCAGTGACAGAAATAGTGACGATCCAATTGAAGTTTGAAGGGAGTAAATATATATATAAAATAGTTTTACACTTAGCCAGCGTCGAGCGTCTCACCTGTCCAGGTTGAGTTTGTGCGCCAGCATCCTCCAGTCATTGCCGCGGGTCTGAGGAGCGTCCAGACTCCCGCACAGCTTCTGCCGGATGGACAGCGGGATCCGGAAGGCGTTCGGACCCACCAGTGTGGTGATGTTACTGGCCGGATCCAGAAGAGACGTGTCGATGCACTGAGAGTCCTCAGACAGGGTGGTGTTGAGCTGGAAGATCTGTCCCTCCCCCTCCACCTGCCTCACACACAGTTTACAGGACAGCTCGAGCGTGGCGGCGCTGAAGCGCTCCAGGGTGAAGGTGCAGTGCAGGTTCCGCTGAGAGCCGCTCCACACCTGCTGGAAGGGAAGCTCCTGGTATTTGGCGATGAGTTTGCTCTTCCAGAGGGTGTGCGGGACGTCGTGCAGCGACAGACGCAGGTTGTGGGTGCTGTCCTTGAAGTTCAGAGACTTGGGTTCGTCCAGCAGCTTCCCGCCCATCTGTTTCTCCATCTGAAGCACCTCCTTCAGCGCGTCCTGCGTGTCGTCCAGACAGTAGACTCTGATGTTGTACTCCAGGACGGTGCAGCTCACGGGGCCGAAGATGGCCAGCTTCAGTCTCTTGGTGGTGGCGGCGCTGACGGACTGACCCACCAAACAATACGTGCCCAGCGTCTCGGTCAGGATGTGACAGGCCTCCTCGTCCATCTGAATGTAGCAGGGGGTGGTGAAGTTCTCCTCGCCCACAACCACCACGTCCTCCCACTGGCCCTGCTGTGATTGGCTCTTCAGCTGAATGAGCCAGTCCTCGCTGTCAGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU444863 True 1238 lncRNA 0.51 5 851479 864003

Neighbor

gene id symbol gene type direction distance location
CI01000203_00785171_00795571 NA coding downstream 55605 784795 ~ 795874 (-)
CI01000203_00751604_00767282 NA coding downstream 84146 750225 ~ 767333 (-)
CI01000203_00688736_00692413 NA coding downstream 158388 688012 ~ 693091 (-)
CI01000203_00612664_00618559 NA coding downstream 232647 612573 ~ 618832 (-)
CI01000203_00599048_00599578 NA coding downstream 251518 598954 ~ 599961 (-)
CI01000203_00868664_00881343 BMPR1BB, BMPR1B coding upstream 4129 868132 ~ 881343 (-)
CI01000203_00929195_00932784 NA coding upstream 65060 929063 ~ 932784 (-)
G388658 NA non-coding downstream 20218 828211 ~ 831261 (-)
G388606 NA non-coding downstream 23459 677074 ~ 828020 (-)
G388656 NA non-coding downstream 115834 730700 ~ 735645 (-)
G388578 NA non-coding downstream 148975 630412 ~ 702504 (-)
G388686 NA non-coding upstream 5224 869227 ~ 873848 (-)
CI01000203_00294049_00335783 AKT2, AKT2L other downstream 534873 293775 ~ 335783 (-)
CI01000203_00287087_00290157 NHLRC3 other downstream 564149 285712 ~ 290157 (-)
G388454 NA other downstream 632554 216789 ~ 218925 (-)
G388477 NA other downstream 679215 171163 ~ 172264 (-)

Expression


Co-expression Network