XLOC_012117 (trmt61b)


Basic Information

Item Value
gene id XLOC_012117
gene name trmt61b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24815186 ~ 24820801 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023880
GAGCAGCAGTATTGCATCTGTCAGTGACGTCCGTTCCATCATGGCGGCTCCCTGTGAGAATCATGCTTTTACTCATGGATTGTTTTTCATCTAACATAACAGAGCTGCCGCGAACACCAGTATCCAGCAAATGAATAACTATATAACTAACTACTTGTGTATTAAAACGGGTCGTTTGAACGTATTTCTGCAGAGCAAATCTATTTGACTTTGTGTCGTCCATTCTGGTTGGTGCTGGTGCAGAAGCGCACAAGCTCAACATCATGACGCCTCCATTTTCCTTGGTTCTCTCCTTCATGCCTCGTAAATTTGCCAGAGTCTCTGGACACAATATATTTCGGGTTAAACCTTCTGTCTGTGGACTGAGCAGCTTCAGCACGGACTCCAAAGACACCGACCGGGATGTTTCAGAAGCGGCTCCTGCACCCGCTTCTCAGTTCTCTAGGAGAGTTCTTGGGAGACGCAGACCTCTGTCCCCGCTGGAGAGGGTCAGTCAGCTGCTACCCCAGGACAGCCTGAGCCCGGAGGTCTGGGGTCTTCGGGACACCAGAACCACCGAGGAGGAACCGAGCAGTCCGAGTCTGGAGAAGGAGAGAGAAGAAGaaactcatcatcatcatcagcatcatcatcatcatcatcatgtgtgTGTTCCTGGAGAAAGGCTAATGTGTTTCGGAGAGACTCTGATGGCCGAGTTCAGACGAGCGAGAGATGTGGAGTTTCGGAAGATGTTCGAGCTGAAGGAGAGACAGAAGCTCTACAGTAATTGGGGATCAGTGGCTCATGATGACATGGAGGGTCGTCCTGCGGGAAGCGTCATCCGCACTTCAAAAGGAATCCCGTTCGTCATTCGGAGAGTCAGTCTGGAGGAGTTCGTGCTCTTCATGAAAAGAGGACCAGCTATTGCTTACCCCAAAGACGCCAGTGCGATGTTGACCATGATGGATGTGACTGAAGGAGATTGTGTCCTGGAATGCGGCTCCGGCTCTGGTGGCATGAGCCTCTTCTTGTCCAGAGCAGTGGGATATAAAGGAAGTGTTTTGAGTGTGGAGATTAGAGAGGATCATCATAAACGTTCAGTATTAAACTATCAGCGCTGGCTTAACACATGGCGTCGCCGGGGAGGACAGGAATGGCCTGATAATGTCCACTTTCATCATGGTGATATCATATCTGCTGGCACTCTTCTGGCTGGACGGGGTTTGAACTCAGTTGCTTTGGATATGATCAATCCACATTTGGCTTTACCTGTCGTGGTTCCTTACCTTCATCCTGGATCTGTGTGTGCAGTTTATCAAGCAAACATCACACAGGTCATTGATCTGTTAGAAGCACTGCGATGCTCTGCGCTTCCTCTGGTTTGTGAATGCATAACTGAGGTTCAGCACAGGGATTGGCTAGTTGTCCCATCACTCAAAAAAGATGGAACATTCAATAAGCGAAAAGCTCCATATGAAAATGGTGATCAGGATGAACCAAGTTTAAAAACAGAAGAGGTTTTGAATAGTCAAGATGCAGTGCCGTTTGGAGATGTCCAGTACATTGCACGTCCGCATCCTGAGCAGGTTGGTCATACAGCTTTCCTTGTGAAATTACGAAAGATCCTGAAATAGATGTTTCACACGCCTAATGTGTTCATCACAACAACAGAGCTACTGTATCTTGCCTACAATAAAAATTTAGCTAaattgttttgtacattttttttacttttgtatttaAGCCAAAGAATCTTAATCTCTGTTGATGGAATAAATTATCAGTGTTTATTCATATTA

Function

symbol description
trmt61b Predicted to enable methyltransferase activity. Predicted to contribute to tRNA (adenine-N1-)-methyltransferase activity. Predicted to be involved in mitochondrial tRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in mitochondrion. Orthologous to human TRMT61B (tRNA methyltransferase 61B).

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0070901 mitochondrial tRNA methylation biological_process
GO:0031515 tRNA (m1A) methyltransferase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-35 Predicted to enable methyltransferase activity. Predicted to contribute to tRNA (adenine-N1-)-methyltransferase activity. Predicted to be involved in mitochondrial tRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in mitochondrion. Orthologous to human TRMT61B (tRNA methyltransferase 61B).

Ensembl:

ensembl_id ENSDARG00000097465

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023880 True 1781 mRNA 0.46 7 24815186 24820801

Neighbor

gene id symbol gene type direction distance location
XLOC_012116 si:ch211-15d5.11 coding downstream 97259 24695594 ~ 24717927 (-)
XLOC_012115 morn2 coding downstream 130499 24681280 ~ 24684687 (-)
XLOC_012114 arhgef33 coding downstream 134221 24668528 ~ 24680965 (-)
XLOC_012112 CR352220.2 coding downstream 183205 24588834 ~ 24631981 (-)
XLOC_012113 NA coding downstream 211261 24602633 ~ 24603925 (-)
XLOC_012118 CR388164.1 coding upstream 16881 24837682 ~ 24838927 (-)
XLOC_012119 hmgcl coding upstream 34583 24855384 ~ 24866964 (-)
XLOC_012120 zbtb8a coding upstream 48570 24869371 ~ 24890932 (-)
XLOC_012121 si:ch211-195o20.7 coding upstream 70955 24891756 ~ 24916889 (-)
XLOC_012122 zgc:193593 coding upstream 96549 24917350 ~ 24938845 (-)
XLOC_012107 NA non-coding downstream 496615 24307366 ~ 24318571 (-)
XLOC_012106 NA non-coding downstream 513497 24296350 ~ 24301689 (-)
XLOC_012105 NA non-coding downstream 595504 24203699 ~ 24219682 (-)
XLOC_012104 NA non-coding downstream 788329 24023307 ~ 24026857 (-)
XLOC_012103 NA non-coding downstream 827676 23985873 ~ 23987510 (-)
XLOC_012123 NA non-coding upstream 367810 25188611 ~ 25197601 (-)
XLOC_012124 NA non-coding upstream 423637 25244438 ~ 25246610 (-)
XLOC_012130 NA non-coding upstream 692123 25512924 ~ 25522751 (-)
XLOC_012132 NA non-coding upstream 764686 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 non-coding upstream 766824 25587625 ~ 25588430 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_01860321_01864056 TRMT61B coding CI01000313 null 1860251 ~ 1864898 (-)