XLOC_012125 (ppie)


Basic Information

Item Value
gene id XLOC_012125
gene name ppie
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25296982 ~ 25303486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023902
TATACATAACTGATATGTACATCACATTCAACCTATTTGCATTCATTAGTCTGTTTAAAAGACGGTTGTTAGAAGTGTGGGCAGCacaaatacagggagaacattcaaactccaaactgacccagctaaggctcaaaccagcgaccttttttctCCACTGCGGCGCCCCCGAAGTACATAATGAATCCAGAGTGTCAAAATGTCAATCAGATTTTACTCCAGTTCACCAGAGGGCGACATACCAAACCTCAGTGGTAAAGAACACAGCCTGAAGTCAAAGGTTACACGCAAGATGGCGGCCAGCAAACGTGTTCTTTATGTTGgtGGTCTTGCAGAGGAGGTGGATGAGAAAGTGCTGCACGCTGCGTTTATTCCTTTCGGTGACATTACAGATATTCAGATCCCGTTAGATTATGAGACAGAGAAACACAGAGGCTTTGCTTTTATCGAGTTCGAGCTGGCAGAGGATTCAGCAGCTGCTATTGATAACATGAACGAGTCTGAGCTGTTTGGCAGAACCATCAGGGTGAACATCGCCAAACCCATGAGAATTAAAGAGGGCTCCTCTCGCCCAGTGTGGTCTGACGATGACTGGCTGAAGAAGTTCTCGGGGAAGAAAGCAGAGGAGAGTGAAGAGGCCGAGTCAGCTGCAGAATCAGCAAGTACAGAGACACAAGAGGGAGAACCTCCAGCAAAAAAAGGCAGAACCAATCCTCAAGTCTATATGGATATCAAGATTGGCAACAAACCTGCAGGCCGACTGCGCTTCCTTCTGCGAGCTGATGTTGTGCCTATGACTGCAGAAAATTTCCGTTGTTTGTGCACACATGAGAAAGGCTTTGGATTCAAGGGCAGCAGCTTCCACAGAATCATCCCTCAATTTATGTGCCAGGGTGGAGATTTCACCAACCACAATGGCACTGGGGGGAAATCCATATATGGACGCAAGTTTGAAGACGAGAACTTTGTCCTGAAGCACACCCATGCAGGTCAGCTTTCGATGGCCAATTCTGGTCCCAATACTAACGGTTCACAGTTCTTCATCACTGTTGATAAGACAGACTGGCTGGATGGCAAACATGTGGTGTTCGGAGAGCTTACAGAGGGCATGGATGTGCTCCGGGCCATGGAGGCTCAGGGAACAAAAGATGGCAAACCCAAACAGAAGGTCATCATCTCCAACTGTGGAGAGTATGTTTGAGAtcaacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
ppie Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIE (peptidylprolyl isomerase E).

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-050417-167 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIE (peptidylprolyl isomerase E).

Ensembl:

ensembl_id ENSDARG00000103234

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023902 True 1255 mRNA 0.47 10 25296982 25303486

Neighbor

gene id symbol gene type direction distance location
XLOC_012124 NA coding downstream 50372 25244438 ~ 25246610 (-)
XLOC_012123 NA coding downstream 99381 25188611 ~ 25197601 (-)
XLOC_012122 zgc:193593 coding downstream 358137 24917350 ~ 24938845 (-)
XLOC_012121 si:ch211-195o20.7 coding downstream 380093 24891756 ~ 24916889 (-)
XLOC_012120 zbtb8a coding downstream 406050 24869371 ~ 24890932 (-)
XLOC_012126 pabpc4 coding upstream 185 25303671 ~ 25326685 (-)
XLOC_012127 zpcx coding upstream 24865 25328351 ~ 25331447 (-)
XLOC_012128 lck coding upstream 41248 25344734 ~ 25382376 (-)
XLOC_012129 fam167b coding upstream 89038 25392524 ~ 25397558 (-)
XLOC_012130 NA coding upstream 209438 25512924 ~ 25522751 (-)
XLOC_012107 NA non-coding downstream 978411 24307366 ~ 24318571 (-)
XLOC_012106 NA non-coding downstream 995293 24296350 ~ 24301689 (-)
XLOC_012105 NA non-coding downstream 1077300 24203699 ~ 24219682 (-)
XLOC_012132 NA non-coding upstream 282001 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 non-coding upstream 284139 25587625 ~ 25588430 (-)
XLOC_012140 BX000364.3 non-coding upstream 560819 25864305 ~ 25864419 (-)
XLOC_012141 NA non-coding upstream 589936 25893422 ~ 25897784 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_04996555_05001479 PPIE coding CI01000310 null 4996555 ~ 5001573 (+)