XLOC_012126 (pabpc4)


Basic Information

Item Value
gene id XLOC_012126
gene name pabpc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25303671 ~ 25326685 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023903
ATGAACGCAGCGACCGCGGGGAGTTATCCGATGGCTTCTCTTTATGTGGGCGACCTGCACCCCGATATCACGGAGGCGATGCTGTATGAGAAATTCAGTCCGGCCGGCCCGGTGCTCTCCATCCGCGTGTGTCGGGATATGATCACGCGGCGCTCGCTGGGCTATGCCTACGTCAACTTCCAGCAGCCTGCGGACGCGGAGAGAGCTTTGGACACAATGAACTTCGATGTGGTCAAAGGAAAGCCCATCAGAATCATGTGGTCACAAAGAGATCCATCACTTAGGAAATCTGGGGTTGGAAACGTATTTATCAAAAATCTGGACAAGTCCATCGACAACAAAGCTCTGTATGACACCTTCTCTGCCTTTGGAAACATCCTGTCTTGCAAGGTGGTGTGCGACGAGAACGGATCGAAAGGCTATGCCTTTGTGCATTTTGAAACTCAGGACGCAGCCGATCGTGCCATTGAGAAGATGAATGGAATGTTGCTGAACGACCGCAAGGTGTTTGTGGGCCGTTTCAAGTCCAGGAAGGAGAGAGAGGCAGAAATGGGTGCCAAAGCCAAAGAGTTCACTAATGTTTACATCAAGAACTTTGGCGATGACATGGATGATCAGAGACTGAAGGAGCTCTTTGATAAATATGGTAAAACACTGAGCGTGAAGGTCATGACTGACCCCACAGGGAAATCTCGGGGATTTGGTTTTGTTAGCTACGAGAAGCATGAAGATGCTAACAAGGCGGTGGAAGAGATGAATGGTACTGAGCTCAATGGTAAGACGGTGTTTGTTGGCCGAGCACAAAAAAAAATGGAGCGACAAGCAGAACTCAAGAGGAAGTTTGAACAGCTTAAACAGGAAAGAATCAGCAGATATCAGGGTGTTAACTTGTACATCAAGAATCTTGATGACACCATCGATGATGAGAAACTTCGTAAAGAGTTTTCTCCTTTTGGCTCCATTACAAGTGCCAAGgtgaTGCTGGAGGAGGGCAGGTCCAAAGGTTTTGGTTTTGTGTGTTTCTCCTCTCCTGAGGAAGCCACAAAGGCTGTGACAGAGATGAATGGGCGTATTGTGGGCTCCAAACCACTATACGTAGCCCTAGCTCAACGTAAAGAAGAGCGCAAAGCTCATCTGACCAACCAGTACATGCAGCGGATTGCCGGTATGAGGGCCATGCCTGCCAATGCCATCATCAACCAGTTCCAGCCTGCCGGCGGATACTTCATGCCAGCCGTGCCACAGGCCCAGAACAGAACAACATACTATGCACCAAACCAGCTCACCCAGATGCGTCCAAACCCGCGCTGGCAGCAGCAGGGTGGCAGAGGTCAGGGTGGTTTCCAGGGCATGCCCAGCTCCTTACGCCAGCCAGGGCCCCGGGCTAACATTCGCCACCTGGCACCCAATGCTTCCAACCAAGGCCCACGCGGGATGCCCACAGGTGCACAGAGAGTGGGAGGGACTGGCCAACCGATGGGTCCCCGTCCTGCCATGGGGATGACGACCCCACGTGCCATGCCACCATACAAATATGCCTCCACCATCCGAAACACTCAGCCTCAGGTAGTGCAGCCCATCGCTCTGCAGCAGGCTCAGCCGGCTGTTCATGTTCAGGGTCAGGAGCCTCTCACTGCCTCCATGTTAGCTGCTGCTCCTCCTCAGGAACAGAAACAGATGCTTGGTGAGCGTTTGTTCCCTCTTATCCAGGCGATGCATCCCAGTCTAGCTGGAAAAATCACAGGAATGCTGCTCGAAATCGACAACTCTGAGCTGCTGCACATGCTGGAGTCCCATGAGTCTCTGCGCTCTAAGgTGGAGGAGGCTGTCGCTGTGCTTCAGGCTCATCAGGCCAAGAAAGACGCAACACAGAAAGTGGGAGTCACTGCTGCCACTGCAGCCGCAACATCCTGACCAGGTGAAGCTGAACAGCTGAAGAGAGATCACCACTGTCTGGTGTTGTCTGGTGGCAACCAatagaaacagaaaacagaaaatatatatatatataaaaaaatagaaaaatacaaaacaatacttGAACATAAAGAAAACCGTTTTGTTGCAGGGCTTATATTGTTAACTCTGTAATGATTTTTATCACCTGAAGTTGATTTTCAGAAGAGGTCTTTCTGTGAGGAAAGAGCCTCTGTCTTGTGGCCAGGACTGATTTTTTTCCCTGAGGAAGTGCAGACGTGCTTCTTCTGTGAGCTGTGAGTTTGCTGCTTTGATTGGACCTCACTTGTCCCATGACAGTAACTTGAGTGGTGTGGCACTCTAAATAAAGGGATgactatttaaaatgaacttattttctgtgcgtttcttttttttatatacatttagcCAAGACTAGAAGGCCATTTTTGGtgacaataattttattttatttttttatcaaaaatgaCCACATGGACAGTTCATTCATGTACAGGTTAAATATTCTGCTTAATTGGCCAATGCtgacataaatattaataatatcctATTTTACTTTTAGCTGATACTAATCACATGACCGAAGCCAATAGGTGTATTCGACTTAAACCACGGCTGCAGTCGGTGATCAAgaagattagccgagcgcagctGAAAACGGAGCTGTCAAGCCAGACACTTCGGTGCTCAAAGTCGTGGCAGTTATGAtaaccgatcacatggcgtcatcatcatcatttatttttaacaacaaaagatttacagtaaaaataaaagagaatacagtctctacaaactatagttcatttttaaacaataagggattTATGAGTTAATTTTAAGTAGCCtatacaacattcattcatttttttttcggcttagtccctttattaaacttatgcaggatatgttttacttagcggatgcctttccagctgcaacccatctctggaaaacatctatacacacctaacacactcatacactatacggacaatttagcctccccaattcacctgtaccgcatgtgggggaaatcagagcacccagaggaaacccaagcgaatgcggggagaacatgcaatctccacaccgaaacgccaactgactgtTTTAAAATTTGTGAGATGGAATTTGTCTAATAATAAACTTGAATCACATGTCGTTGTTGTCCTGCGGTGAATCCAGCcgatcgtgtaatatcggtgttgTCATcgcagctcctgcagtcgctcttcagatatGCCCCCAGCTGATTCAATCAACTGATCTCTGAGTGCTGTCGTGGTattttgatgccacatgtgacagtcatgCACAGTGTCAAGCCATTCTAAATTTCTAACCGgccaaagaaatgcgctataggtgaattgaataaactaaattgactgtagtgtataagtgtgaatgagtgttttccagcactgggttgcagctggaagggcatccactgcgtaaaacatatgctggataagttgggggttcattcacctgtggcgacccctaattaataatgGGACGAAGCTGaagagaaaattaatgaatgaaaagctGTTTTTACCTTATTTTGTGAATATGACGCTTATGTCTCTGATGCTCACACAGTGTGATGTACTCTGAAATACaaatgtgcaaaataatcattaagtcgtcaaaaacaatatttaaacaaatttagtaGAGAGCTTGTCAAATTACAAGTTGAGAAGAAGAGGTCCGCATTAGGGGCAAGTGATGATCTATCTGTCCATTACTGCTCCCGAGTTATGCATAAATGGGCATTAAATGCTAATTCAATAGTTTACATGtgtctgttgcctcattacaaacataaacaGCAAAGTGAATATAATTTACACTAAACCAACAAAAGATACAGTTTAACAGCAGATTAAACATATTCTATTTTTCCTGAATTTTATGTTTAGACAAGCTGTAAATAGATACtatctaaagcaggtcgcacaccagaaacTGCTCAGTGCCacgcatttcagaattctaaacagaAGTTTCTATCAGGGTCTGTAGCGATCAAATATTCCTGAGGTAACTGTCAGTGTTATTCTCTGATTtgcttatttttctgttttttttttttttttaccctggatttacatgagaatgaggtGTTTGAGGCTCACACAGTATGTTATTTCCATGCATTGaacttattattaggcctattcaATTATGCATATGTATATCCAGATTTTCTTTCAATGGCAACTTTAGTAATATCACAATAGAAACTTTATAAATCATGATAGTACTATTTA
>TCONS_00023904
CTCTTTCCCCGGCCACCACACCGTGAGTGTATAACTCACTGTTCTTCAgtacctttaaaaaaagaaaaaaaaacatataaaaaatacaaaataacgaAAATCTCAAAAAATAACTACAAACCAAACAacgttttttaaagaaaaaactttttttgttttttaaaagacgAGGTCTCGATCTACCCAGTGGTTTTCTGCCAGTTCCTCCGACCGGACTCATATGCTGTAGCTGTCACTGCTGCCGAAATCGTTTATTCGGGGAGAAGCGTAAAAGTTTAATAGAGGATTAAGAGACTCATTTGTCCCACTGGTTCTCGGACACTCTTTACGCACTGTCATTTCAGCACTAGACAAACACACGGGCTCAGAGGCTTGATCGACCCCGAGACATGAACGCAGCGACCGCGGGGAGTTATCCGATGGCTTCTCTTTATGTGGGCGACCTGCACCCCGATATCACGGAGGCGATGCTGTATGAGAAATTCAGTCCGGCCGGCCCGGTGCTCTCCATCCGCGTGTGTCGGGATATGATCACGCGGCGCTCGCTGGGCTATGCCTACGTCAACTTCCAGCAGCCTGCGGACGCGGAGAGAGCTTTGGACACAATGAACTTCGATGTGGTCAAAGGAAAGCCCATCAGAATCATGTGGTCACAAAGAGATCCATCACTTAGGAAATCTGGGGTTGGAAACGTATTTATCAAAAATCTGGACAAGTCCATCGACAACAAAGCTCTGTATGACACCTTCTCTGCCTTTGGAAACATCCTGTCTTGCAAGGTGGTGTGCGACGAGAACGGATCGAAAGGCTATGCCTTTGTGCATTTTGAAACTCAGGACGCAGCCGATCGTGCCATTGAGAAGATGAATGGAATGTTGCTGAACGACCGCAAGGTGTTTGTGGGCCGTTTCAAGTCCAGGAAGGAGAGAGAGGCAGAAATGGGTGCCAAAGCCAAAGAGTTCACTAATGTTTACATCAAGAACTTTGGCGATGACATGGATGATCAGAGACTGAAGGAGCTCTTTGATAAATATGGTAAAACACTGAGCGTGAAGGTCATGACTGACCCCACAGGGAAATCTCGGGGATTTGGTTTTGTTAGCTACGAGAAGCATGAAGATGCTAACAAGGCGGTGGAAGAGATGAATGGTACTGAGCTCAATGGTAAGACGGTGTTTGTTGGCCGAGCACAAAAAAAAATGGAGCGACAAGCAGAACTCAAGAGGAAGTTTGAACAGCTTAAACAGGAAAGAATCAGCAGATATCAGGGTGTTAACTTGTACATCAAGAATCTTGATGACACCATCGATGATGAGAAACTTCGTAAAGAGTTTTCTCCTTTTGGCTCCATTACAAGTGCCAAGgtgaTGCTGGAGGAGGGCAGGTCCAAAGGTTTTGGTTTTGTGTGTTTCTCCTCTCCTGAGGAAGCCACAAAGGCTGTGACAGAGATGAATGGGCGTATTGTGGGCTCCAAACCACTATACGTAGCCCTAGCTCAACGTAAAGAAGAGCGCAAAGCTCATCTGACCAACCAGTACATGCAGCGGATTGCCGGTATGAGGGCCATGCCTGCCAATGCCATCATCAACCAGTTCCAGCCTGCCGGCGGATACTTCATGCCAGCCGTGCCACAGGCCCAGAACAGAACAACATACTATGCACCAAACCAGCTCACCCAGATGCGTCCAAACCCGCGCTGGCAGCAGCAGGGTGGCAGAGGTCAGGGTGGTTTCCAGGGCATGCCCAGCTCCTTACGCCAGCCAGGGCCCCGGGCTAACATTCGCCACCTGGCACCCAATGCTTCCAACCAAGGCCCACGCGGGATGCCCACAGGTGCACAGAGAGTGGGAGGGACTGGCCAACCGATGGGTCCCCGTCCTGCCATGGGGATGACGACCCCACGTGCCATGCCACCATACAAATATGCCTCCACCATCCGAAACACTCAGCCTCAGGTAGTGCAGCCCATCGCTCTGCAGCAGGCTCAGCCGGCTGTTCATGTTCAGGGTCAGGAGCCTCTCACTGCCTCCATGTTAGCTGCTGCTCCTCCTCAGGAACAGAAACAGATGCTTGGTGAGCGTTTGTTCCCTCTTATCCAGGCGATGCATCCCAGTCTAGCTGGAAAAATCACAGGAATGCTGCTCGAAATCGACAACTCTGAGCTGCTGCACATGCTGGAGTCCCATGAGTCTCTGCGCTCTAAG

Function

symbol description
pabpc4 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to several human genes including PABPC4 (poly(A) binding protein cytoplasmic 4).

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008143 poly(A) binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008266 poly(U) RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9663 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to several human genes including PABPC4 (poly(A) binding protein cytoplasmic 4).

Ensembl:

ensembl_id ENSDARG00000059259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023903 False 4220 mRNA 0.44 14 25303671 25326296
TCONS_00023904 True 2204 mRNA 0.50 12 25308166 25326685

Neighbor

gene id symbol gene type direction distance location
XLOC_012125 ppie coding downstream 185 25296982 ~ 25303486 (-)
XLOC_012124 NA coding downstream 57061 25244438 ~ 25246610 (-)
XLOC_012123 NA coding downstream 106070 25188611 ~ 25197601 (-)
XLOC_012122 zgc:193593 coding downstream 364826 24917350 ~ 24938845 (-)
XLOC_012121 si:ch211-195o20.7 coding downstream 386782 24891756 ~ 24916889 (-)
XLOC_012127 zpcx coding upstream 1666 25328351 ~ 25331447 (-)
XLOC_012128 lck coding upstream 18049 25344734 ~ 25382376 (-)
XLOC_012129 fam167b coding upstream 65839 25392524 ~ 25397558 (-)
XLOC_012130 NA coding upstream 186239 25512924 ~ 25522751 (-)
XLOC_012131 rtn4ip1 coding upstream 223550 25550235 ~ 25563847 (-)
XLOC_012107 NA non-coding downstream 985100 24307366 ~ 24318571 (-)
XLOC_012106 NA non-coding downstream 1001982 24296350 ~ 24301689 (-)
XLOC_012105 NA non-coding downstream 1083989 24203699 ~ 24219682 (-)
XLOC_012132 NA non-coding upstream 258802 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 non-coding upstream 260940 25587625 ~ 25588430 (-)
XLOC_012140 BX000364.3 non-coding upstream 537620 25864305 ~ 25864419 (-)
XLOC_012141 NA non-coding upstream 566737 25893422 ~ 25897784 (-)

Expression


Co-expression Network