XLOC_012131 (rtn4ip1)


Basic Information

Item Value
gene id XLOC_012131
gene name rtn4ip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25550235 ~ 25563847 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023913
CTGTTCTCGAGCGTGTTATTCAACAgttataacatttatttctgaCCAATGACGGGTTTGTGATACTATAAGCGGGATCCTCTGGATTATCTTTTTAAAGTTTGATCAACCATGTTGATGTGTAGACGGTGGTTGGTGTGCTCGCTGAGATGTCATTACAGGAGCTTCAGTTTCTCAGCCGCTCGCAGGACTGTAATGCCCGCATGGGTCATTGATAAATACGGGAAAAACGATGTGTTGAGGTTCACCAAGAACGCGGCGCTTCCGATCATCCACTATCCTAATGAAGTGGTGGTAAAGGTGCACGCTGCGGGTCTCAACCCAATTGACATCAGTATGAGGGGTGGCTATGGAGCAGCTACTATGGCCATGAAGCGTGACCCACTGAACATCAGCCAATCAGGTGGTGAATTTCCTCTCATTCTGGGTCGAGATGTATCCGGAGAGATCATGGAATGTGGGCTGGATGTGAAGTACTTTAAACCAGGAGATCAGGTGTGGGCCGCTATTCCTCCATGGAAGCAGGGCAGTCTGGCAGAGTTTGTAGTGGTCAGTGGCAATGAGGTTTCACATAAGCCTAAATCACTGAGGCATGATGAAGCCGCATCCATCCCGTATGTGGCTGCAACAGCCTGGTCTGCCATCGTCAACACCGGTGGCCTCAACAAAGATAACTCTGTAAAAAAACGTGTTCTTATTCTGGGAGGATCAGGAGGAGTGGGAACTTTTGCAATACAGATGGTAAAGGCCTGGGGTGCACATGTGACTGTAACATGTTCCCAGAATGCTGAGCGGCTGGTGAGAGACCTAGGTGCTGATGATGTCGTGGACTACACTGCTGGGCCAGTTGAAAAGCAGCTAAAGAATTTTGAAAAGTTCGATTTGATTTTAGACAGCATTGGGGGTGAAACTGAAAAATGGGCCCTAGATCTCCTGAAACCCTGGAGTGGTGCTAAATTTGTGACCCTGATAACACCTTTCCTGCAAAACACAGACCGACTGGGCCTTGCGGATGGAATGATGCAGTCTGCAGTCACTGTAGGATGCAAAGTGGTGAAGAACCTCAGGAAAGGAGTGCATTATCGCTGGGGTTTCTTTGCTCCAAGCGGCTCTGCGCTGGACGAGGTTAGCGAAATGGTTGACGCTGGAAAGGTCCGTCCAGTAGTGGAGGAAGTGTTTTCATTTGCTCAGGTGCCAGAAGCCTTTCAGAAAGTAGAGCAGGGTCATGCTCGAGGAAAAACTGTCGTCTCTATCATGGAGGACCAGAAAGAGTAACTATTGCAGTCAAGAGAATACTGTTAAACATGGACAATGGGATATGcgatttttttttccagtctgTTGAATTAAATGCATTTCTGTAATGGCAA

Function

symbol description
rtn4ip1 Predicted to enable oxidoreductase activity. Acts upstream of or within eye photoreceptor cell development and retina layer formation. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in optic atrophy 10. Orthologous to human RTN4IP1 (reticulon 4 interacting protein 1).

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050773 regulation of dendrite development biological_process
GO:0007399 nervous system development biological_process
GO:0010842 retina layer formation biological_process
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040426-1314 Predicted to enable oxidoreductase activity. Acts upstream of or within eye photoreceptor cell development and retina layer formation. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in optic atrophy 10. Orthologous to human RTN4IP1 (reticulon 4 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000031366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023913 True 1370 mRNA 0.48 9 25550235 25563847

Neighbor

gene id symbol gene type direction distance location
XLOC_012130 NA coding downstream 27484 25512924 ~ 25522751 (-)
XLOC_012129 fam167b coding downstream 152677 25392524 ~ 25397558 (-)
XLOC_012128 lck coding downstream 167859 25344734 ~ 25382376 (-)
XLOC_012127 zpcx coding downstream 218788 25328351 ~ 25331447 (-)
XLOC_012126 pabpc4 coding downstream 223550 25303671 ~ 25326685 (-)
XLOC_012132 NA coding upstream 21640 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 coding upstream 23778 25587625 ~ 25588430 (-)
XLOC_012134 rab3gap2 coding upstream 45979 25609826 ~ 25630848 (-)
XLOC_012135 ppp1cb coding upstream 72106 25635953 ~ 25649079 (-)
XLOC_012136 si:ch211-214p16.3 coding upstream 86092 25649939 ~ 25737452 (-)
XLOC_012124 NA non-coding downstream 303625 25244438 ~ 25246610 (-)
XLOC_012123 NA non-coding downstream 352634 25188611 ~ 25197601 (-)
XLOC_012107 NA non-coding downstream 1231664 24307366 ~ 24318571 (-)
XLOC_012106 NA non-coding downstream 1248546 24296350 ~ 24301689 (-)
XLOC_012140 BX000364.3 non-coding upstream 300458 25864305 ~ 25864419 (-)
XLOC_012141 NA non-coding upstream 329575 25893422 ~ 25897784 (-)
XLOC_012142 NA non-coding upstream 389663 25953510 ~ 25955190 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000312_00142706_00155969 RTN4IP1 coding CI01000312 null 142640 ~ 156137 (+)