XLOC_012135 (ppp1cb)


Basic Information

Item Value
gene id XLOC_012135
gene name ppp1cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25635953 ~ 25649079 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023920
CTGCATGCAGAACTCGGCACTGAAGATGGCGGAGGGGGAATTAAACGTTGACAGTCTCATCTCTCGACTTCTTGAAGTGCGAGGATGTCGTCCTGGGAAGATCGTTCAGATGACGGAAGCAGAAGTTCGAGGACTCTGCATTAAGTCTCGAGAGATCTTCCTCAGCCAGCCCATCCTGCTGGAGCTGGAGGCGCCACTTAAAATCTGTGGTGACATCCATGGGCAGTACACAGATCTGTTGAGGTTGTTTGAATATGGTGGTTTTCCACCGGAGGCAAACTATCTCTTTCTGGGTGATTATGTGGACCGAGGAAAGCAGTCTTTGGAGACCATCTGCCTCCTGCTGGCCTATAAGATCAAATACCCAGAGAATTTCTTCCTCCTGAGGGGAAACCATGAGTGCGCCTCCATCAACCGTATCTATGGCTTCTATGATGAGTGCAAGCGCAGGTTCAACATCAAGCTCTGGAAGACATTCACAGACTGCTTTAACTGCCTCCCAATCGCTGCCATCATAGATGAGAAGATTTTCTGTTGCCATGGAGGTCTTTCTCCTGATCTGCAGTCAATGGAACAGATACGTCGAATTATGCGACCAACTGATGTCCCAgatacagGGTTGCTGTGTGATTTGCTGTGGTCAGACCCCGATAAGGACGTTCAGGGATGGGGAGAGAATGATCGTGGTGTTTCATTCACATTTGGTGCTGATGTAGTCAGCAAATTCCTGAACCGCCACGACCTGGACTTAATCTGTAGGGCACATCAGGTGGTTGAGGATGGTTATGAATTCTTTGCGAAGCGGCAGTTGGTCACTCTGTTTTCAGCGCCAAACTACTGCGGGGAGTTTGACAATGCCGGTGGAATGATGAGTGTGGATGAGTCACTCATGTGCTCTTTTCAGATCCTGAAGCCATCAGAAAAGAAGGCAAAGTATCAGTACAGCGGGGTGAATTCAGGGCGACCTGTGACCCCGCCCCGTACTGCCCAAGCCCCCAAGAAGAGGTGAGCGGCTCGCCAGCCGGAACCACACTCTCCATCCCCCATCCCCACCTTCAGCAAAGTACCCCTTTATGGGGCAGCTTGTCCTTCCCAATTTCCCCTATGAAGTCTGTCTACTCGCCCTGCCAAACCTCTTTCTCCTTTCTTAAAATTTGTGTACAGAAATTTTGCTGTGACCAGTGGAATTCTCTTTTCTTTTGctctgcttgtttgtttattggtattttaataacataaataataataataaatactgctTTTGGTAAGCAGCTCCTGACTTGCTCTACAAAGATCCCAGAGCAAAACACACACTCGTTCTTTTACGCAAAGATCTCGGTAGTGTGCTGATATATAAGCATTTTGTTGAACTTTACTTCAGTACTCTTTGATTATTGAACATTAATGTCGATTCATGAAGAAAGAGTGATGATTGTAAGTATTAATGGTTGATGTGTATTTCGCTACACGATGAAGTTTCAAGACCAGAGGCTttcacgaacacacacacacttaacgcTGTCAGGGTCACAGGTCAGCAGACACTTCACACAGACGCAAATCTATTGTCGATAAAATAGGTCGGTGTGGACAAAGCTAGAAAAAGGGATTTTAAATTGGATACCGtgacatgcgcgcacacacacacacacatttgcacagcTGCATTTACAAACGGCATTGCATGTTCTGTTTTCTTAAAAACCTCTGGGACTTACAGCAAAACTCTATAGACCTCTGTTTAACGTGCTGTTTTTATGTCTGATGATAGTAATAATTCAGGAGAAAAGTGTCACGGCATAACACTTTGCATGACCCATGTACATGTCTGTAATAACCTGTCTGAAATGACGTAATCCACCAGCCATTTTCTCATTGGATAACTAAACCAAGTGGAAAATAACCTCCAAGTTGAAGAGTCACACTTGTTTGAAGTTCCCCAACATTATTTCGAAGgttaaaagtgatttaatttgatttgtttaacAACTAAAAGAGTAGCACATGTGACTAAACAACAATGCCTTTGTGTGAGGGTTGCTCTTCCTCACGTGGATATTCATCTGTCATAACAcactctttttttaatgtttttatttgtgtgtgttgctGTTTACTTCTCCTTAATTTATTTCCAAACGTTGGGAAAAGCTATCAAAGTGTTCTAAAAGCAGTTCATGAGTTTTGTATAAGTGGGCttcaaaattaataaatggaAGAAAACT
>TCONS_00023921
TAAACGTTGACAGTCTCATCTCTCGACTTCTTGAAGTGCGAGGATGTCGTCCTGGGAAGATCGTTCAGATGACGGAAGCAGAAGTTCGAGGACTCTGCATTAAGTCTCGAGAGATCTTCCTCAGCCAGCCCATCCTGCTGGAGCTGGAGGCGCCACTTAAAATCTGTGGTGACATCCATGGGCAGTACACAGATCTGTTGAGGTTGTTTGAATATGGTGGTTTTCCACCGGAGGCAAACTATCTCTTTCTGGGTGATTATGTGGACCGAGGAAAGCAGTCTTTGGAGACCATCTGCCTCCTGCTGGCCTATAAGATCAAATACCCAGAGAATTTCTTCCTCCTGAGGGGAAACCATGAGTGCGCCTCCATCAACCGTATCTATGGCTTCTATGATGAGTGTGAGCATCTGAGAgcatgcatatttaaacataaccCCCCTCTCTACCAACTGCAAACATTGTGTGGACAAGATTTCAGATAATGCATCGCGCTGTATTATTATGCCCATTTGTATGTTTCAGGCAAGCGCAGGTTCAACATCAAGCTCTGGAAGACATTCACAGACTGCTTTAACTGCCTCCCAATCGCTGCCATCATAGATGAGAAGATTTTCTGTTGCCATGGAGGT

Function

symbol description
ppp1cb Enables protein heterodimerization activity. Acts upstream of or within convergent extension involved in axis elongation and liver development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 2. Orthologous to human PPP1CB (protein phosphatase 1 catalytic subunit beta).

GO:

id name namespace
GO:0042752 regulation of circadian rhythm biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0001889 liver development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-609 Enables protein heterodimerization activity. Acts upstream of or within convergent extension involved in axis elongation and liver development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 2. Orthologous to human PPP1CB (protein phosphatase 1 catalytic subunit beta).

Ensembl:

ensembl_id ENSDARG00000044153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023920 False 2225 mRNA 0.44 8 25635953 25649079
TCONS_00023921 True 629 lncRNA 0.47 3 25639564 25649038

Neighbor

gene id symbol gene type direction distance location
XLOC_012134 rab3gap2 coding downstream 5105 25609826 ~ 25630848 (-)
XLOC_012133 si:ch211-214p16.2 coding downstream 47523 25587625 ~ 25588430 (-)
XLOC_012132 NA coding downstream 49095 25585487 ~ 25586858 (-)
XLOC_012131 rtn4ip1 coding downstream 72106 25550235 ~ 25563847 (-)
XLOC_012130 NA coding downstream 113202 25512924 ~ 25522751 (-)
XLOC_012136 si:ch211-214p16.3 coding upstream 860 25649939 ~ 25737452 (-)
XLOC_012137 hhat coding upstream 128251 25777330 ~ 25831569 (-)
XLOC_012138 AL929023.1 coding upstream 172309 25821388 ~ 25847551 (-)
XLOC_012139 BX000364.4 coding upstream 212114 25861193 ~ 25861787 (-)
XLOC_012140 BX000364.3 coding upstream 215226 25864305 ~ 25864419 (-)
XLOC_012124 NA non-coding downstream 389343 25244438 ~ 25246610 (-)
XLOC_012123 NA non-coding downstream 438352 25188611 ~ 25197601 (-)
XLOC_012141 NA non-coding upstream 244343 25893422 ~ 25897784 (-)
XLOC_012142 NA non-coding upstream 304431 25953510 ~ 25955190 (-)
XLOC_012147 AL928908.2 non-coding upstream 1134847 26783926 ~ 26802736 (-)
XLOC_012151 NA non-coding upstream 1301333 26950412 ~ 26968341 (-)

Expression


Co-expression Network