G390897


Basic Information

Item Value
gene id G390897
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 554611 ~ 558680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU447544
TTGGCATTTGTTGCCTCCAGCTTAAGAGAAAAAGCATTCTGGAGAATGTAAGGATGGCGAAAACACTCTCTCAGAACTAGAGAGGTAGATTTACTCTTTCTCATTCCAAAATATGAAACAGTAGAACAGATATTCATTGACGACTCACTCATTCACAACAACTTTCAACATGAAACAAGAGCAAGTTTAAAGAACAAGAACAAAACTTTACAGACACTTTTCGTGTACCCTTGTGGCATCTTGTGGCACCCCCCCCCCCCAGTAATCCTGCTCATCTGTCTGACAGGAAATGAATTTTCTTTTCAGGCCGTCTCAGAACAAATTGCTTTCGGCTTGCTTGCCTTTCTCTGAACCGTGTCGTTATAAAATTCCTCTGCGGTTGTTTTTCCGAATACCGCCTATATGAGGTCCATGAAGAGTCCTGAATTTGCCAGCTAGAATCACATGCACACACACACAAACACACAATCCAATGCAAAACTCCTTCAACACATTGTACACTGTGTAAAATCCCCAATAAATCAATTTCTTTGTGTCCTTAATATCAGGTGCTGCACCCTTGTCCTAAATCATTAGCGGCTACGATTGACAGAGGGTTGACAGCGAAAGAGGCCGAGCAGGTGTCTTGTCTCTCCAGTCCATCCTGCACACATATTCCACACACACACACTCAGACGGACACATTCTCGACCTCTCCGATCCGCGCTCTCTTCCTATCCTGATCCGCAGCTGCCGGTTCTAGCCAGCAGACACAGGTTCAAGTTCCACTCCGTAAAAAAGCTCACACATTGCTACGGTGTCACTGGACAGGCGAATGACGTGCGATGGTGACGGAGGTGAACTCCTCTTTCGCCGCGGTGTCCGGTTGCCGCCGCTGGCCCGCTTCTTCGCTCGTCACAGGAATGCAGGAGGACTGACAGCAGCGTTGACGGCAGCAGTGGCTCGCAGTTAGTGTTGAGTGTCCTGTGTGTGTGCATGCGGGGATGTGTGTCCTCTCCAGGCTTGTTTTGATACCAGACACCTGCTGAGCGACGGTAAACTGCGTGCATGACTCCGGCGAACCTTCATGCCGGCCTGCGCCGTATTTTCCATGGGATTCTCTGAGAGGGCCTGTCTTCGGCCACCTGAGCGGACGAGGATTTTGGTGAAAATAAAAAGAAGGGTCTATTTTCCGTCACTTTTGCAGATGCTCTCACAGGGGACACTGTTCGGAGCTGAAGGAACCTCCTTCCTTCTTTTTCCTACGCTTCTTCTTATGGGCCGTCCAGCAAGCGGTCGCCATCAGTACCAGGATCAGCCCCGCGATCAGAAGGAACACGGACACCACCTTGGTCTGCGGGAGATCGTTATACGTGTACGTCACCCCAGTTCCGGCAACTCCAATCACCAACGAGATGATCCCGAAGGGAAAGATGCAGCGGTACCAGGACTTCTCCATCCCTCCCGTGGCTTGCGAAAGCCTCTCTAGGGATGAAAGGACCTCAGGGACTTTGGGCCCTCCTTCTTGTGACTGTCCCTCCAGGGTTGGGGCTGCCGTTGTCTGCGGTTGGCAGGTGAAGTGCCCTGTGGTACATCCCATCTTAAAGCCAGGATGCAGGAAACACAACAACAAGAGAGGATGCGCTGAAGAGAGGAAATGCAATTTATGGATGTGAAGATACTCTCACAATGTCTGTGGGTTTGTCAGTGACACAGTGCTCTGCCTCTCAAGCCCACAGCAGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU447544 True 1724 TUCP 0.50 2 554611 558680

Neighbor

gene id symbol gene type direction distance location
CI01000208_00519333_00533133 CFAP70 coding downstream 21103 518930 ~ 533508 (-)
CI01000208_00460863_00461309 NA coding downstream 91288 460843 ~ 463323 (-)
CI01000208_00377420_00379255 NA coding downstream 175356 376916 ~ 379255 (-)
CI01000208_00329225_00336625 NA coding downstream 216454 329188 ~ 338157 (-)
CI01000208_00288775_00294023 NA coding downstream 260057 288686 ~ 298024 (-)
G390906 NA non-coding downstream 3676 550657 ~ 550935 (-)
G390904 NA non-coding downstream 10456 543994 ~ 544155 (-)
G390844 NA non-coding downstream 42168 420179 ~ 512443 (-)
G390843 NA non-coding downstream 45704 414687 ~ 508907 (-)
G390847 NA non-coding downstream 68821 483051 ~ 485790 (-)
G390909 NA non-coding upstream 4878 563558 ~ 563787 (-)
G390894 NA non-coding upstream 12818 571498 ~ 584002 (-)
G390932 NA non-coding upstream 87837 646517 ~ 648546 (-)
G390889 NA non-coding upstream 96861 655541 ~ 677572 (-)
G390888 NA non-coding upstream 100925 659605 ~ 675210 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 misc NC_053126.1 CM020923.1 13769019 ~ 13781685 (+)
mexican tetra (Astyanax mexicanus) G297943 LOC103033642,LOC108431896,LOC107553625 non-coding NW_019172828.1 APWO02000046.1 5718590 ~ 5724662 (-)