XLOC_012151


Basic Information

Item Value
gene id XLOC_012151
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26950412 ~ 26968341 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024911
CTCAGGTGTGGCCTCCAGAAAGGTTTGATCCGATTGCCATGATTTCTGCGACGGTTGAGGCAGGAGAGAGTCGAAGATGTTGTTCAGGTTGACTTGCTTATCATAGTTGTCTGTTGTGTAGCTGTCAGTGCTAGGCTTTGAGGGGTTGAAGGACATGTTTTCTGAAAGGAACTTCATGATGTGAGCGTTCTCCAGCGGGGCAAGTTCAGGGGAAGAGCTGTTTGCCGTCCTACAACATAAATCACATGACGTATCTTTTGCATCCTGAGGAATAAAGAAGATGTTAATCTAGAGAAGCTCCGGGATTAAAGCATGGATGTGAGTCATGGAGTGAAGGAATGCTGAATACACCTGCAGACACCTGCCGAAAAGCCCTAATGGCACATGTCAAACATCACGCCTGCCTGTGACGGGATGGGACGGGGAGAAGGAGGAACAGGGGTGAACATGGAGAGCGAGCGGAGGAGGCAGAAACAAGCAAAGGGTGCTGGTTTGTGCCCACAGCTACACAACAGGTTCAACCTGAACCCAGCGCTAACAAAGACTGTGATTACAAGGTGCTGAAAAAATGAAGGAagagacaaacaaacagaaagcAAATGAAACGGGGCCTTTTGTTTCACCGTGATGGCTTTTGAAAAGTCAGGGTTTATGGTGGAGAGCTGCGCCTGCGTGTCTGTCTGTACGTCCATCTCTCCGTACGGATTAACCTCTGTCAAGTAGCTGACAGGACGGTTAGCTCAAACAAACCATTACTGCATTAACACTCACCCAGACAGGTGACAATCCACACACGTTTGCTGAGCTCATCCCACAGACCCAGCCAAAATCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024911 True 833 lncRNA 0.49 2 26950412 26968341

Neighbor

gene id symbol gene type direction distance location
XLOC_012150 nipal3 coding downstream 15073 26928418 ~ 26935339 (-)
XLOC_012149 rcan3 coding downstream 23835 26879725 ~ 26926577 (-)
XLOC_012148 si:dkey-221l4.10 coding downstream 76372 26850124 ~ 26874040 (-)
XLOC_012147 AL928908.2 coding downstream 147676 26783926 ~ 26802736 (-)
XLOC_012146 calm1a coding downstream 229405 26713111 ~ 26721007 (-)
XLOC_012152 AL928908.3 coding upstream 13694 26982035 ~ 26985759 (-)
XLOC_012153 cnksr1 coding upstream 22190 26990531 ~ 27048640 (-)
XLOC_012154 asap3 coding upstream 218607 27186948 ~ 27235797 (-)
XLOC_012155 si:ch211-160f23.5 coding upstream 275106 27243447 ~ 27266053 (-)
XLOC_012156 id3 coding upstream 303058 27271399 ~ 27273296 (-)
XLOC_012142 NA non-coding downstream 995222 25953510 ~ 25955190 (-)
XLOC_012141 NA non-coding downstream 1052628 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 non-coding downstream 1085993 25864305 ~ 25864419 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1361982 25587625 ~ 25588430 (-)
XLOC_012158 NA non-coding upstream 434302 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1562126 28530467 ~ 28530582 (-)
XLOC_012165 BX465838.1 non-coding upstream 1655707 28624048 ~ 28624176 (-)
XLOC_012166 BX465838.2 non-coding upstream 1675117 28643458 ~ 28652512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_00527327_00527614 NA coding CI01000189 null 526280 ~ 527662 (-)