XLOC_012152 (AL928908.3)


Basic Information

Item Value
gene id XLOC_012152
gene name AL928908.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26982035 ~ 26985759 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023948
CAATTGTTTCAGAACTGTTAGGAGAAATTACTAGGAATGATAAacggaaaaaaaaactgttaaactacttgctctacaaacaagtgtgttcatgactaaacagacaaagcagaataatataataagaaaatgtcagtttgcaacatcaagcagcataacaagctttAACGTCTGAAATTGAATGGAACTGAATGAGAcaggaagtctcgagccaaaaagattcaaatggctgtgcccactGGTACATGAAAAATAAggtgaagcagctaatcaaggtcttgctggGCTTACTAGTACCTTCAATACAGGTGtgttggagctaaagtctgcaggacagGCAGGCACCCTCCAGGACCAACTTTGGACAACCCTGATCCAAACTCTTGACACAAATATTCTAGCATGAATGCCCCCTAAGAGTCTCTTGAGTCCTCTGAAATGTTTGGTCCATCTAACAGTTCACCGCATACATCTCTGTACTGTCCTTGAGTCTCTGTTTGCGGCAGAATGAACACTTCATGTCTTTGAACCCGTAGAGCAGTGCAATCCCTCCCAGCACCTGTACACAAGCTCCCACCCACCCGAAGTACAGCGATCCAGCCGGGTGTAGAGTTAGTCGGGGTGGCTTGTGCGCATTGAGTCCTTGCGTCTCTGATAAATTTGAATCCACATCAATCCCCAGCTTGGAAAGATGGCAAGTGTATACTCCTAATGCAGCCAGGCTGAGCACACCAGCCAGCGCCACCAACAGGCCACCAGCTGCCGCTACACTCCTCAGCGGGATATCAGTCCAGCAACGGACACCAATGCTGGCGAGCACGATCCCTGCTCCGCAAAGGAAGAGAGACGACAGTACCATGCCCTGGACCATCCGGACCCGAGAGTCCCGCTGGTAGGACCCTGACACAGGCCAGCATTCTTTGACCTCAGAGTGCACCACCTGCAGGCAGCTCTCCCATAGGCCATCCGAGCGGAGTAGGAGGAGCTCTGTTGCCCCACCCTTTCCAGCAGCACCCAGCCGCGCCTGACCTTCTCTCCACTGTGGCGTGATGGCAGCAGTGAACACCAGCACGAGGCCTAGAGGGGCGAACACCACCCCCATCAGCATGGATGCTGGAGTGTGCATCTCGTCAATGGGGATCTCTTCAAGATGAAACCACTGTTAACAACCTGATCTGGAAGAGAATAACATGGCTTGTTAGCTGACGGCTCTCCTTTGAGCTCTAAGGAACATCGTCGCTCCTGGCAACAAGCAGAGTGGAGGTGAATGGCCCGCTGTTGCTAAGAGACAGTAACCTGGATGATGGTACAGCTGCATCTTTTGTGGTACATCTGAAACAGTTCTTAAAATACCAGCCACAGGTGTTAGACTGAGCATCGCCTTCTGACGCAAATGTGTGGTGGTGTTGTCCTACAAGCTGAGACTGTGAACACATTTTAAACCAGAGATATTATATGTAGACGGCAAGTCAGACGGCTGTGTGCTCAGAGAGCAAGCCCATGCCTGTTCCACACATAAATCACAAATGAGAAAGCGTGAATGACGCGATGCTATTAAAAGTGGATATTTTTAGTACGTGTGCCCTCTCTTTCTTGCAGAGCATTTTCATTATCTAATTAACCGTTAAACAACATCTTGACAATATCACCATCAGATGTATCTCCTAGACACAGATGTGGGCAGATATTTTAACATATTGG

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097636

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023948 True 1701 lncRNA 0.48 2 26982035 26985759

Neighbor

gene id symbol gene type direction distance location
XLOC_012151 NA coding downstream 13694 26950412 ~ 26968341 (-)
XLOC_012150 nipal3 coding downstream 46696 26928418 ~ 26935339 (-)
XLOC_012149 rcan3 coding downstream 55458 26879725 ~ 26926577 (-)
XLOC_012148 si:dkey-221l4.10 coding downstream 107995 26850124 ~ 26874040 (-)
XLOC_012147 AL928908.2 coding downstream 179299 26783926 ~ 26802736 (-)
XLOC_012153 cnksr1 coding upstream 4772 26990531 ~ 27048640 (-)
XLOC_012154 asap3 coding upstream 201189 27186948 ~ 27235797 (-)
XLOC_012155 si:ch211-160f23.5 coding upstream 257688 27243447 ~ 27266053 (-)
XLOC_012156 id3 coding upstream 285640 27271399 ~ 27273296 (-)
XLOC_012157 si:ch1073-358c10.1 coding upstream 328329 27314088 ~ 27382868 (-)
XLOC_012142 NA non-coding downstream 1026845 25953510 ~ 25955190 (-)
XLOC_012141 NA non-coding downstream 1084251 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 non-coding downstream 1117616 25864305 ~ 25864419 (-)
XLOC_012158 NA non-coding upstream 416884 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1544708 28530467 ~ 28530582 (-)
XLOC_012165 BX465838.1 non-coding upstream 1638289 28624048 ~ 28624176 (-)
XLOC_012166 BX465838.2 non-coding upstream 1657699 28643458 ~ 28652512 (-)
XLOC_012172 NA non-coding upstream 1935813 28921572 ~ 29022679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_00552262_00553370 NA coding CI01000189 null 550833 ~ 553486 (+)