XLOC_012155 (si:ch211-160f23.5)


Basic Information

Item Value
gene id XLOC_012155
gene name si:ch211-160f23.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27243447 ~ 27266053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023957
CGCTGCGCGCCTCTAACCGCGGGAGATCCAAATTTCGCGGGACGTAATTTGGCGCTAAAATAGCACTCCTCTGTTGAGCTGATGTCAAAGCAAAGCTTTTCTGCTGGAGAAGGATTACAGACACACAGGGACCTTTCTCACGGTCACTGGCTTTACTCGATAACTGCGAGAGGAACATTTTGAAGCTTTACTTATCATTGAAAGGTAGTTTTATCAAGCATTGTGCGTGTAGTATATGTTTAAGTTATTTTCATTATAACAAAACAGAATAGCTTCTCCTGTGCTACAACAACAAAGGACCCTGGGATACTTTGTGCAACTCGGATgattatattttcttattttcacgCGTAATTTATCTGCaactttaacattatttattatactaATATTGCAATATACTATTATACAACTATCGCTTGTAGCATTAGCATTGTTTTAAGATACACGTATTCATTAACGCTTGATTGGTTCTGCAGTGAACTACAAACGCAATTTGCGTAATAAAAGAGTTTCTTTTGCGTCACTTTCGCGGGTTTTGCATTCCGTGCGCAAAATGATGCGGATACCCAGAGGGATTTCTCCTGCTTCGGGAAGAGGCGCAGGAACTGCACTCTCGTGCCCGCAGAAGAAAATGTTCACCGCGATGAGGACGGACTTTTTCACCACGGGACTGGCAAGTCCACCGATGAATTCGGTACCGGCTGGATACTTCACTCAGATCGGGAACACGACAGCTGTGGAGCAGAGACCCAACTGTTTGTATGCGACCCCCCACGGGCCCGAGCCTAAGCCGGTGCGGACTTCTTCCGGGCGGCTACCGGCCAAGAGGAGACTAGATCTGGAAGAACCACTTTATCTCCCAGAATTTCGAACTCCAAAAGGGAAAGGAAATGCTGCATGTGCGAGAGCATCAAGCCCCAAAACTCCTAAATCTCCAGGAGAACGCACCCGTTACGATACATCCCTTGGCCTGCTGACTAAGAAGTTTGTGGGCTTGCTGAGTGAATCTGCTGATGGGGTTCTGGATCTAAACTGGGCCTCAGAGGTTCTGGAGGTTCAGAAGAGACGCATCTATGACATCACCAATGTTCTGGAAGGAGTGCAGCTCATCCGCAAGAAATCCAAAAACAATATCCAGTGGCTGATCAGTGGTGTATTTGAAGGTTCGTCCAGCAACTCGGAGAAAGCCAGCGCTCTCAATAAAGAGCTCTCTGAACTGGACAGACAGGAGAAAGCTCTGGACGATCTCATTCAGTCCAGCTCAACACGACTACGAGAAATGACGGAGAGCAAGGACAACCAAAGATTAGGGTATGTGACGTATCAGGACATTCGTACCATAACCAGCTTGAAAGATCAAACTGTGATTGCTGTCAAAGCACCATCTGAAACCAAACTGGAAGTTCCAGAAGCGTCCGAGgGCTCTCTGCAGATTTACTTGAAGAGCAAGAATGGCCCTATCGAAGTGTACTTGTGTCCTGAAGAGTGTTTGGAGTACACTAGTCCCATCAAGAATGCCACACCCAGAAAAGATTACCCACAAACCCCCAGTGCCACCACACCCTCCGTCTTCCCACCTGCAAAACCCCAGTCTGTCGAAGGTCCAAAGACTCAGCCCTCGATGGCAGCGAGCACCAGTGGAAACGGCTCTCTTTTGGACGTGGAGGGCATTCTGGATCTTCCTCCTAGTCTTCTGCAGATCACAGAAGACCAGCTGCCCGGGATGGCCTTCGCATCTGACCCCTCTGGGCCCTTTGTCAGTTTCTCTCCTCAGCTCGGCCACGATGACTACCTCTGGGGTCTGGACGACGGAGAAGGCGTTTCAGACTTTTTTGACACTTACGACCTGGGAGATCTGCTCAAAACATGAAGCGTTCAGTGTGATGAACAGTCACTGATGATCTGAGAGTTAAATTATAATTAGTTCAATTCAGACCCAAATCCTGTAGTTGAAGACTGTTTCTAAAACACTTCTTGATGATAGATTGAAGTTTGTATTAAATGCACTACTGAATTGGCTAGGATTAAGTGAATGTCTattttgaagggatagttcaccgaaaaaaaattaaaattctgtcatttattaatCCTCAAAGGTtcttgtttctgttgaacacaaaagtagatattttgaggaatgatGAAAGCCAtcaacatccatagtaggaaaaaacactGCTGTTTACAgcttttatttataatatgctcttttgtgttcaacagaggacagAAACTGAAACAGGTTTAGATCACGTAGAGGACTAAATGGTGACAGAATCATCATTTtaatgggtgaactatccctttaactactATAGCGATTATAATCTTGACGCCCTCTAGAGGAGATCTGGGAGTTAGAATTAGTACACTATGAagccatatgtttttttttctgtcagccaTATTACCTACAGCAAGGTATTTCTgcctgcatagtttagtttagAATATTTTTGACAAAGCTCAAATTCATTTTCTcaagttgtttttaattatttcaattttctaatttaattatttgctaaGATTTTGGTCATTATGACTTAAGCATTGACCAAAAATCAAGTGCTAGGTGCTTGTGTTCTCTAGGTATGAACTAGAATGTTTATTAGTATTTGAATTAGATGCAACTCAGGTCATTTTAAAGCTTTTCCACAGCTTTATTTTTGTAGTACTGTCAGTCATCGCCAGCAGAGGGCAGTGTGACCATTTTTCAGACGTCTGCAAACAAAGGTGCCTCTGCAGATGTAGATAGATGAAAGTATTAGAGTTTGAGAGCATAAAAATGGTGGGTATCTGCTTCAAAATCAGACTCAGAGTGCTGAAAAACTCTTCTAAGACATTCTACCTCCATCTTTTGAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-704 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Orthologous to human E2F2 (E2F transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000079233

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023957 True 2871 mRNA 0.43 7 27243447 27266053

Neighbor

gene id symbol gene type direction distance location
XLOC_012154 asap3 coding downstream 7650 27186948 ~ 27235797 (-)
XLOC_012153 cnksr1 coding downstream 194807 26990531 ~ 27048640 (-)
XLOC_012152 AL928908.3 coding downstream 257688 26982035 ~ 26985759 (-)
XLOC_012151 NA coding downstream 275106 26950412 ~ 26968341 (-)
XLOC_012150 nipal3 coding downstream 308108 26928418 ~ 26935339 (-)
XLOC_012156 id3 coding upstream 5346 27271399 ~ 27273296 (-)
XLOC_012157 si:ch1073-358c10.1 coding upstream 48035 27314088 ~ 27382868 (-)
XLOC_012158 NA coding upstream 136590 27402643 ~ 27403751 (-)
XLOC_012159 ythdf2 coding upstream 141865 27407918 ~ 27419499 (-)
XLOC_012160 ptafr coding upstream 705091 27971144 ~ 27976031 (-)
XLOC_012147 AL928908.2 non-coding downstream 440711 26783926 ~ 26802736 (-)
XLOC_012142 NA non-coding downstream 1288257 25953510 ~ 25955190 (-)
XLOC_012141 NA non-coding downstream 1345663 25893422 ~ 25897784 (-)
XLOC_012163 BX465838.4 non-coding upstream 1264414 28530467 ~ 28530582 (-)
XLOC_012165 BX465838.1 non-coding upstream 1357995 28624048 ~ 28624176 (-)
XLOC_012166 BX465838.2 non-coding upstream 1377405 28643458 ~ 28652512 (-)
XLOC_012172 NA non-coding upstream 1655519 28921572 ~ 29022679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_00744231_00759517 NA coding CI01000189 null 744103 ~ 759517 (-)