XLOC_012158


Basic Information

Item Value
gene id XLOC_012158
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27402643 ~ 27403751 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024912
taaatgtaataataatctaaaactacatatttaatttgAGACTCGTGTAAGGCTTCTCGACTTTATTATCTAAACTTTGCTTCTTATTTTATAATTAGGCTGGTTTATTCtttaatagaaaaatattttttaggtTAAATGTGTTTCCGTTGTGGTCTTAATAGGCTTAGGGGTGTTAGGTGAAAGCCTGTACTGTGACGTAGGCTATATGGCCTCAAGTTGATTTAAGAGCAAGGCGTCGTTTCTCTACGTCTTGGTGCATAACggcaatttctaaatatttatattgaatttaaacGAAAATTCGCAATGCTGTTTTACAAAGCTGAATATTTGCTTCCTTTTTAAGCATATCTGAAATCGTCAAGAAGACAAATGTGAAGTGTGGACAAAATAAATACGTCCTAAAGGTTTGTACTTTATATGCGAACAACAAAAATTAACCGTAACTGTGTGCAGATGTATTAAAGCGTAAAATGCAACACCAGCAATGTCGTCGCGTGGTGTCTGAATGACTGTCAAAGTGATTAATATTTGCTTTTATTGTCTTCACAGTTGTGTGTTCCGTCGACAGAAATCTAGCCTGAGGGGCAGAGCCTCATCCCAGACCGTGTTTGCCTTTCTTTTGTGAGTAAAATTCATCATTAGTCATAAATAATAGGTAAACTTTGACCCCTCTAAACATCTGCGCCACGTGCCCAGAGCAGATAGCTGATTTATTACTGCTAGTGTGAAGGGGACATGATTTGAATGTCAGGAGCATGACGGTGGGCCTTATGCTCTTATGCTGTGGTGTTTGTGCtgtttaaaatgtcaattaaaaggTTGCTACAAACCCTATTGATACCTAGCTAAATTAAAAGGGTTTGTTCCAAAAGACTCCTGAGCTTTACTCTAAAATTACTGCATCACAATGCTGTCAGAAATTGTAAAATGATGAAATATTTTGGTATTAGTGTGTTATATTCAAATCTTTTAATCCCATACTTACTACATAGCATTTGCATATCAAACTTCAGCGCATGTATTGATGGTTTGTGTTGTGAAATGTAGGTCATAACGCAACCTTTGCAGTTTTTGCCTCCGAGCATTTTTGCCGAGCATTGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024912 True 1109 lncRNA 0.36 1 27402643 27403751

Neighbor

gene id symbol gene type direction distance location
XLOC_012157 si:ch1073-358c10.1 coding downstream 19775 27314088 ~ 27382868 (-)
XLOC_012156 id3 coding downstream 129347 27271399 ~ 27273296 (-)
XLOC_012155 si:ch211-160f23.5 coding downstream 136590 27243447 ~ 27266053 (-)
XLOC_012154 asap3 coding downstream 166846 27186948 ~ 27235797 (-)
XLOC_012153 cnksr1 coding downstream 354003 26990531 ~ 27048640 (-)
XLOC_012159 ythdf2 coding upstream 4167 27407918 ~ 27419499 (-)
XLOC_012160 ptafr coding upstream 567393 27971144 ~ 27976031 (-)
XLOC_012161 kdm1a coding upstream 678690 28082441 ~ 28101989 (-)
XLOC_012162 htr1d coding upstream 763108 28166859 ~ 28198099 (-)
XLOC_012163 BX465838.4 coding upstream 1126716 28530467 ~ 28530582 (-)
XLOC_012152 AL928908.3 non-coding downstream 416884 26982035 ~ 26985759 (-)
XLOC_012151 NA non-coding downstream 434302 26950412 ~ 26968341 (-)
XLOC_012147 AL928908.2 non-coding downstream 599907 26783926 ~ 26802736 (-)
XLOC_012142 NA non-coding downstream 1447453 25953510 ~ 25955190 (-)
XLOC_012141 NA non-coding downstream 1504859 25893422 ~ 25897784 (-)
XLOC_012165 BX465838.1 non-coding upstream 1220297 28624048 ~ 28624176 (-)
XLOC_012166 BX465838.2 non-coding upstream 1239707 28643458 ~ 28652512 (-)
XLOC_012172 NA non-coding upstream 1517821 28921572 ~ 29022679 (-)
XLOC_012176 NA non-coding upstream 1812315 29216066 ~ 29224911 (-)

Expression


Co-expression Network