XLOC_012167 (ap4s1)


Basic Information

Item Value
gene id XLOC_012167
gene name ap4s1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28703971 ~ 28707970 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023981
GAGAATAGTTGACAAAGTCTGCTGGCTTTCATTGACAGATGCGTCCCGTGACACAATAAATCCGCAACAAACAACTATTAGATCTGCTTCTGTGATCGTGGTGCTGTATCACACCTCTGAGTCACTATGATCAAGTTCCTGCTGATGGTGAACAAACAGGGGCAGACTCGCCTCTCTAAGTATTATGAAGCAGTGGATCTTGGGAAGAGAGCAGCTCTGGAGGCTGACGTGGTGCGTGGATGTCTGGCCCGGAGGAAGGAAGAGAATGAACTCTCTATCTATGAACTTGTGCACAACTTTGTGGAGGTGCTAGACAAATATTTCAGTCGTGTGAGTGAGCTGGATATCATGTTTAATTTAGACAAAGTACACATTATTCTTGATGAAATGATCCTGAACGGACACATCGTGGAGACCAATAAGAACAGAATACTGGCACCACTACTGGCCCTGGACAAGATGACTGAAAGCTGATCTGATGTTAATGACCAGTCATCATTGCTTTGCtacaaataaatgtgtttttctttgtgtCACCATTCTAAACCTCATCCTGTTTTTTCACAAAttggttttataataataataattaaagctgcaggCAGCAAtaaaagggacctcgcacccgggctcaccccTGCCCGGTGGCCTAAGGATGACAGAGAATTATATACATTtaagatagaaaaaaaaattataacctgagaaaatcacagatttatgttAAACCTTctatcagcaggtggcgctataactgtaactcaATGTTGGCAT
>TCONS_00023982
CCCAGTAGATGGATCAATAAAAAAAGCGACCCATACGGACGCCATATTGACCAAAACAAAATGGCAGAACAAGAGAATAGTTGACAAAGTCTGCTGGCTTTCATTGACAGATGCGTCCCGTGACACAATAAATCCGCAACAAACAACTATTAGATCTGCTTCTGTGATCGTGGTGCTGTATCACACCTCTGAGTCACTATGATCAAGTTCCTGCTGATGGTGAACAAACAGGGGCAGACTCGCCTCTCTAAGTATTATGAAGCAGTGGATCTTGGGAAGAGAGCAGCTCTGGAGGCTGACGTGGTGCGTGGATGTCTGGCCCGGAGGAAGGAAGAGtgctcatttgtagagTATAAGGACTATAAACTGGTCTATCGCCAATATGCAGCTCTTTTCATTGTTGTTGGCGTCACTGAAAATGAGAATGAACTCTCTATCTATGAACTTGTGCACAACTTTGTGGAGGTGCTAGACAAATATTTCAGTCGTGTGGTAAGTAGTGAGCTGGATATCATGTTTAATTTAGACAAAGTACACATTATTCTTGATGAAATGATCCTGAACGGACACATCGTGGAGACCAATAAGAACAGAATACTGGCACCACTACTGGCCCTGGACAAGATGACTGAAAGCTGATCTGATGTTAATGACCAGTCATCATTGCTTTGCtacaaataaatgtgtttttctttgtgtCACCATTCTAAA
>TCONS_00023984
ATGATCAAGTTCCTGCTGATGGTGAACAAACAGGGGCAGACTCGCCTCTCTAAGTATTATGAAGCAGTGGATCTTGGGAAGAGAGCAGCTCTGGAGGCTGACGTGGTGCGTGGATGTCTGGCCCGGAGGAAGGAAGAGtgctcatttgtagagTATAAGGACTATAAACTGGTCTATCGCCAATATGCAGCTCTTTTCATTGTTGTTGGCGTCACTGAAAATGAGAATGAACTCTCTATCTATGAACTTGTGCACAACTTTGTGGAGGTGCTAGACAAATATTTCAGTCGTGTGAGTGAGCTGGATATCATGTTTAATTTAGACAAAGTACACATTATTCTTGATGAAATGATCCTGAACGGACACATCGTGGAGACCAATAAGAACAGAATACTGGCACCACTACTGGCCCTGGACAAGATGACTGAAAGCTGA
>TCONS_00023983
ATGATCAAGTTCCTGCTGATGGTGAACAAACAGGGGCAGACTCGCCTCTCTAAGTATTATGAAGCAGTGGATCTTGGGAAGAGAGCAGCTCTGGAGGCTGACGTGGTGCGTGGATGTCTGGCCCGGAGGAAGGAAGAGtgctcatttgtagagTATAAGGACTATAAACTGGTCTATCGCCAATATGCAGCTCTTTTCATTGTTGTTGGCGTCACTGAAAATGAGAATGAACTCTCTATCTATGAACTTGTGCACAACTTTGTGGAGGTGCTAGACAAATATTTCAGTCGTGTGATCATGTTTAATTTAGACAAAGTACACATTATTCTTGATGAAATGATCCTGAACGGACACATCGTGGAGACCAATAAGAACAGAATACTGGCACCACTACTGGCCCTGGACAAGATGACTGAAAGCTGA

Function

symbol description
ap4s1 Involved in central nervous system neuron axonogenesis. Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in central nervous system. Used to study hereditary spastic paraplegia 52. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 52. Orthologous to human AP4S1 (adaptor related protein complex 4 subunit sigma 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko04142 Lysosome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030616-404 Involved in central nervous system neuron axonogenesis. Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in central nervous system. Used to study hereditary spastic paraplegia 52. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 52. Orthologous to human AP4S1 (adaptor related protein complex 4 subunit sigma 1).

Ensembl:

ensembl_id ENSDARG00000054220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023981 False 774 mRNA 0.42 5 28703971 28707898
TCONS_00023982 False 711 mRNA 0.43 6 28704199 28707970
TCONS_00023984 False 435 mRNA 0.44 5 28704271 28705264
TCONS_00023983 True 423 mRNA 0.44 4 28704271 28705264

Neighbor

gene id symbol gene type direction distance location
XLOC_012166 BX465838.2 coding downstream 51459 28643458 ~ 28652512 (-)
XLOC_012165 BX465838.1 coding downstream 79795 28624048 ~ 28624176 (-)
XLOC_012164 im:7136021 coding downstream 91120 28607417 ~ 28612851 (-)
XLOC_012163 BX465838.4 coding downstream 173389 28530467 ~ 28530582 (-)
XLOC_012162 htr1d coding downstream 505872 28166859 ~ 28198099 (-)
XLOC_012168 coch coding upstream 35691 28743661 ~ 28749640 (-)
XLOC_012169 opn6b coding upstream 52616 28760586 ~ 28770800 (-)
XLOC_012170 scfd1 coding upstream 63058 28771028 ~ 28797395 (-)
XLOC_012171 g2e3 coding upstream 90755 28798725 ~ 28811747 (-)
XLOC_012172 NA coding upstream 213602 28921572 ~ 29022679 (-)
XLOC_012158 NA non-coding downstream 1300220 27402643 ~ 27403751 (-)
XLOC_012152 AL928908.3 non-coding downstream 1718212 26982035 ~ 26985759 (-)
XLOC_012176 NA non-coding upstream 508096 29216066 ~ 29224911 (-)
XLOC_012179 AL845481.1 non-coding upstream 564993 29272963 ~ 29273081 (-)
XLOC_012182 AL928842.1 non-coding upstream 929235 29637205 ~ 29637321 (-)
XLOC_012183 CT027582.2 non-coding upstream 1014115 29722085 ~ 29723213 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_01765011_01768780 AP4S1 coding CI01000189 null 1764962 ~ 1769294 (-)