XLOC_012168 (coch)


Basic Information

Item Value
gene id XLOC_012168
gene name coch
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28743661 ~ 28749640 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023985
AGACACCTCTGGAATATCATCCATAAGggaattactttattttttgtgtatAAGCTTTTAAGGCTGAGGAAACGTCATCCTACACAAAATCTAAATCTTCATTAACCATGTCGTTGTGGTTTGCTGTCCTTCATGTTTTAGGTATTCTCTCTTTGAGCTGGTGCACTTCTGGATCTGAATTAAATGTTGCAACGCCGATTAGCTGTGGGACTCGTGCGGTGGATCTGTCAGACACACATCTGCTGGTGCTCTGTCCAGCAAACTGCTCTCTGTGGAGCCTCTCAGTGTTTGGTTCTGGAGTTTATGCCTCTATTTCCAGCATATGCGGAGCAGCCATTCACAGAGGAATCATAGGTCTGTCTGGTGGACCAGTGGAGGTTCACGGACTGCAAGGGAGGACAAACTACCTCAGCTCTTACGCTCATGGTGTTCAGTCGCAGTCACTGTCGCAATGGAGCGCATCGTTCACTGTGGCCCGAACAATTAGCTTGCCTTTGGAAGTGTCCAGCCAAACCAGCAGTTCTGCCACCGTCGCATCTGGAGCAGCCAAGAAGCCAGTGAAAAAAATAGTGAAGAAGCCTCCTCCAGCAACAGCACACAAAGATTGTCCAGTTGATATGGCTTTGTTGCTGGATAGCAGCTACAACATCGGACAGCGGCGGTTCAACTTGCAGAAGAACTTTGTCAGTAAACTTGCAACCATGCTGAAGGTTGGGACACAAGGTCCTCATGTAGGAGTGGTGCAAACCAGTGAAACACCTCGAACTGAATTCTACCTGACAAACTATACGACAGCCAAAGATGTGACCTTTGCCATCAAAGAAATCCCGTACATTGGGGGCAATACCAATACAGGTAAGGCCATACTGCACACCGTGAGGAACTTCTTCAGTCCGGATTTTGGGGTGCGGAGAGGTTACCCACGGGTGATTGTGGTGTTTGTTGATGGGTGGCCTTCTGATAATGTGGAGGAGGCAGCAATTTTAGCCAGAGAGTCTGGCATTAACATCTTCTTTGTGTCTGTGGCCAAGCCTTCCCCTGAGGAGGCAAGTCTGGTGAGCGATCAAGACTTCATGAGAAAGGCAGTGTGCAAGGACAATGAGTTCTTCACCTTCACCATGCCCAGTTGGTTCAGCACCAACAAGTTTGTAAAGCCACTAGCTCAAAAGCTTTGCTCCATCGATCAGATGCTTTGCAGCAAGACGTGCTACAACTCAGTGGATCTGGGCTTCCTGATCGATGGCTCCAGCAGTGTAGGTGACGGGAACTTCCGGCTGGTGCTGGACCTCCTTGTCTCTATCGCACGTAGCTTTGATATCTCCGACATTGGATCTCGCATTGGTGCTATCCAGTTTACCTATGACCAAAGGATGGAGTTCAACTTCAATGACCATGTCTTGAAAGATAATGCTCTAAGGGCCCTGCAGAAGATCCCATATATGAGCGGGGGAACAGCCACTGGAGATGCCATTAACTTTGCTGTGCGGAGTCTCTTTAAACCCCGCTCAAGCTCCAACAGGAAGTTTCTCATCATCATCACTGATGGACAATCTTACGATGATGTGAGAGTTCCAGCTATGGCTGCCCAAAGAGAGGGAATCACTGTTTACGCAGTGGGTGTTGCTTGGGCTCCTATGGAAGATCTGAAGGCGATGGCGTCTGAGCCCAAGGAGAGCCATGTGTTTTTCACTCGCGAGTTCACCGGGTTGGGACAGTTCCAGCAGCCCATCGTCCGGGGCATTTGCAGGGACTTCACAGAGTTCAATTAGACAATTTTGAGATTTTCTTGAGTGCAAGAATATGAagaaattcaacaaaaaaaaaaaggtgtcagAGTAAATAAGAAAACCACGTTTGTCTTTAGATTTGTAGAAAAAGGGATTTGAACGGTTTTGATATAAAGGAATTGATATGTTTGATCCAAAggtttttacagcttttttgagAATGTATCACACAGTATTGTATGTCAACTTCTCTATATGTGGAGAATGTAATTATTTGTGATTTGTAGTCTTTCTCTTTATGTTTCTGTTGAAAAAAACCAACAACACATTCTTTCGCTGCTTCTGGCAAGCCTTTTTTCCTGTGGAGGGGTCACTGTAACAAAAGGCTCTTTTAGAATAATTTCAGAA
>TCONS_00023986
GACTCGTGCGGTGGATCTGTCAGACACACATCTGCTGGTGCTCTGTCCAGCAAACTGCTCTCTGTGGAGCCTCTCAGTGTTTGGTTCTGGAGTTTATGCCTCTATTTCCAGCATATGCGGAGCAGCCATTCACAGAGGAATCATAGGTCTGTCTGGTGGACCAGTGGAGGTTCACGGACTGCAAGGGAGGACAAACTACCTCAGCTCTTACGCTCATGGTGTTCAGTCGCAGTCACTGTCGCAATGGAGCGCATCGTTCACTGTGGCCCGAACAATTAGCTTGCCTTTGGAAGTGTCCAGCCAAACCAGCAGTTCTGCCACCGTCGCATCTGGAGCAGCCAAGAAGCCAGTGAAAAAAATAGTGAAGAAGCCTCCTCCAGCAACAGCACACAAAGATTGTCCAGTTGATATGGCTTTGTTGCTGGATAGCAGCTACAACATCGGACAGCGGCGGTTCAACTTGCAGAAGAACTTTGTCAGTAAACTTGCAACCATGCTGAAGGTTGGGACACAAGGTCCTCATGTAGGAGTGGTGCAAACCAGTGAAACACCTCGAACTGAATTCTACCTGACAAACTATACGACAGCCAAAGATGTGACCTTTGCCATCAAAGAAATCCCGTACATTGGGGGCAATACCAATACAGGTTTAATAACTTCTCCTGAACTGCGTATTTCATATGAACGAATGGGTTGAACACATGAAATATTTTTGTAAGTAAATCATGCCACCCTTTAGAAGATGTAAACTGAACAAATGTAATTTATAGTGATGcacttaaaataaaatccaaataaatgaagtatacacatgc

Function

symbol description
coch Predicted to act upstream of or within defense response to bacterium and positive regulation of innate immune response. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).

GO:

id name namespace
GO:0045089 positive regulation of innate immune response biological_process
GO:0042742 defense response to bacterium biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030616-403 Predicted to act upstream of or within defense response to bacterium and positive regulation of innate immune response. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).

Ensembl:

ensembl_id ENSDARG00000024032

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023985 False 2135 mRNA 0.46 12 28743661 28749640
TCONS_00023986 True 815 lncRNA 0.46 6 28746633 28748380

Neighbor

gene id symbol gene type direction distance location
XLOC_012167 ap4s1 coding downstream 35691 28703971 ~ 28707970 (-)
XLOC_012166 BX465838.2 coding downstream 91149 28643458 ~ 28652512 (-)
XLOC_012165 BX465838.1 coding downstream 119485 28624048 ~ 28624176 (-)
XLOC_012164 im:7136021 coding downstream 130810 28607417 ~ 28612851 (-)
XLOC_012163 BX465838.4 coding downstream 213079 28530467 ~ 28530582 (-)
XLOC_012169 opn6b coding upstream 10946 28760586 ~ 28770800 (-)
XLOC_012170 scfd1 coding upstream 21388 28771028 ~ 28797395 (-)
XLOC_012171 g2e3 coding upstream 49085 28798725 ~ 28811747 (-)
XLOC_012172 NA coding upstream 171932 28921572 ~ 29022679 (-)
XLOC_012173 foxg1a coding upstream 367387 29117027 ~ 29119362 (-)
XLOC_012158 NA non-coding downstream 1339910 27402643 ~ 27403751 (-)
XLOC_012152 AL928908.3 non-coding downstream 1757902 26982035 ~ 26985759 (-)
XLOC_012176 NA non-coding upstream 466426 29216066 ~ 29224911 (-)
XLOC_012179 AL845481.1 non-coding upstream 523323 29272963 ~ 29273081 (-)
XLOC_012182 AL928842.1 non-coding upstream 887565 29637205 ~ 29637321 (-)
XLOC_012183 CT027582.2 non-coding upstream 972445 29722085 ~ 29723213 (-)

Expression


Co-expression Network