XLOC_012173 (foxg1a)


Basic Information

Item Value
gene id XLOC_012173
gene name foxg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 29117027 ~ 29119362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023992
AAAAAGGTTCAAGCAATTTTTTTACAGCTTAGTGTCTGTGGCTCCGTAATTAATTGTAGCTAGCTGTCTCATATCGACGTGTTTTTAAGGAACATGAAATAGTTGttgcgtgtgtttttttttaattagaggaGTTGCCAGAGCAAGAGATTCGAAGTCCAACTGCTGCTGCTGGTGGTTGTTGCTACTCTATCTTACTTGTGATGTTGGATATGGGAGAAAGAaaagaagtcaaaatgattcCTAAATCATCGTTCAGTATAAACAGTCTGGTTCCCGAAGCCGTGCAAAGCGACaaccaccatcaccaccaccaccagcaacaACAACACCACCACAGAACGGTGCACGAAGAAGAAGAGAAGACTCCTTTACCTGCCCAAGTACAGGAGCAAAAGTCGGAGAACACTTGCGCTAAAAGTGACAATTCATCCCACGACTCCTCGTGCACAGACGAAAAGGAGAAGCAGGAAGAAAAACGGGACGCGAAAGAGGGCGAAGGAGGCAAAGAAGGCGACAAGAAAAACGGCAAGTACGAGAAACCACCTTTTAGCTACAACGCTTTGATTATGATGGCCATTCGGCAGAGTCCGGAGAAGCGATTAACCCTTAACGGCATTTACGAGTTCATTATGAAAAATTTTCCGTATTACCGGGAGAACAAGCAGGGATGGCAGAATTCCATCAGACACAACTTGAGTTTGAACAAATGTTTTGTCAAAGTGCCCCGACATTACGATGACCCCGGGAAGGGGAACTACTGGATGCTTGACCCCTCCAGCGACGACGTGTTCATCGGTGGCACGACGGGCAAACTTCGGCGGAGGTCGACCACTTCTAGGGCAAAGCTGGCGTTTAAAAGAGGCGCGAGGCTTACTTCCACCGGACTGACTTTTATGGATAGAGCTGGCTCTTTATATTGGCCGATGTCGCCGTTCCTCTCGCTTCACCATCCGAGGGCGAGCAGCGCGTTGAGTTACAACGGCGCGTCGTCGGCTTACCCTAGTCACCCAATGTCCTATAGCACAATGTTGACTCAAAACAGTTTGGGGAACAATCACTCTTTCCCGGCCTCAAATGGCTTGAGTGTTGACAGACTCGTAAATGGAGAGATTCCGTACGCCACACACCACCTCACAGCGGCTGCTTTGGCCGCCTCAGTGCCATGTGGGCTCTCCGTACCCTGCTCCGGGACGTACTCTTTGAATCCGTGTTCGGTGAACCTGCTTGCGGGTCAGACCAGTTATTTCTTCCCCCATGTCCCTCACCCATCCATGACCTCCCAGAGCAGCACGTCCATGAGCTCCCGAGCCGCCTCTTCCTCCTCCCCGCAAACGGCCTCTTCTCTCCCGTGTGACTCCTTAAGGCCTTCCCTATCCAGTTTTTCCTCCGGACTTTCCAGTGGACTTTCTGACTACTTCACACATCAGAATCAAGGGtcaacatcaaatccacttatacaCTAACTAGCATCCACAGGATCAGACTGTAAGTGAACATTTTACACCAATTTACactgtaatatatataaatgaaaaaaaaattaaggagaATGAACGGACAATGCAAGCCGAATTCCaggtattttgtattattattattaatattattattattctgcattTATTTCTGATTGTATACAAACGTCAAGTGTCGCGGAACTGTTTTATTATTCCACTGTCAGCAACGTGCAATGTGACCAGAGTAAAAAAAGGATGAagcatagttttttttcttttcttttattgaaAGGCAGTATGATTACTttagaatgtttatttaaatagcagTTGCAGTTCTGTctaagtttaaatgttaaaatatctaATACTACATTGCAGAACAACCTCCAGTCATCATGTTTGCAGTATTATGACGTATCATGAGCACACTGGTGGGATGAGATTTTTCAGAAATTAACAcaaagttttattttcattttttaaataaatatgttctaTAAGTGCACAATGCCCGTTCAAATCCGTGGCtccttgttgtttttttcttttaataataataataataaagactgAGTAATGCATTTTCAgtgcattttatacatatattaacAATACAGTTTCTTTGTAGGCCAAAGAATGGGTATCCAGCaacaaaatatagtttttttcagTATTCATAACTTTACATACAGTTCTGAAGGGGACAGACGTAATGAATGCTTTTAGATTGTGTTTGCATATTTACTGTATGTGGTCACCACCATGCAGGTCACATTCTTTTTGTAATTAGTGAAATGTCAATACCTGTTGTAATTATAGGTTAACTTTGCGAACGTGTAACCCGTGTTGAGTAAATGCCTCATAAAATATTGA

Function

symbol description
foxg1a Predicted to enable sequence-specific double-stranded DNA binding activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye; neuron differentiation; and nose development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neuroectoderm; and presumptive telencephalon. Orthologous to human FOXG1 (forkhead box G1).

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-267 Predicted to enable sequence-specific double-stranded DNA binding activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye; neuron differentiation; and nose development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neuroectoderm; and presumptive telencephalon. Orthologous to human FOXG1 (forkhead box G1).

Ensembl:

ensembl_id ENSDARG00000070769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023992 True 2336 mRNA 0.43 1 29117027 29119362

Neighbor

gene id symbol gene type direction distance location
XLOC_012172 NA coding downstream 94348 28921572 ~ 29022679 (-)
XLOC_012171 g2e3 coding downstream 305280 28798725 ~ 28811747 (-)
XLOC_012170 scfd1 coding downstream 319632 28771028 ~ 28797395 (-)
XLOC_012169 opn6b coding downstream 346227 28760586 ~ 28770800 (-)
XLOC_012168 coch coding downstream 367387 28743661 ~ 28749640 (-)
XLOC_012174 sptbn5 coding upstream 4828 29124190 ~ 29194219 (-)
XLOC_012175 ehd4 coding upstream 76600 29195962 ~ 29213710 (-)
XLOC_012176 NA coding upstream 96704 29216066 ~ 29224911 (-)
XLOC_012177 traf3 coding upstream 108140 29227502 ~ 29249258 (-)
XLOC_012178 rcor1 coding upstream 132300 29251662 ~ 29271359 (-)
XLOC_012166 BX465838.2 non-coding downstream 464515 28643458 ~ 28652512 (-)
XLOC_012165 BX465838.1 non-coding downstream 492851 28624048 ~ 28624176 (-)
XLOC_012163 BX465838.4 non-coding downstream 586445 28530467 ~ 28530582 (-)
XLOC_012158 NA non-coding downstream 1713276 27402643 ~ 27403751 (-)
XLOC_012179 AL845481.1 non-coding upstream 153601 29272963 ~ 29273081 (-)
XLOC_012182 AL928842.1 non-coding upstream 517843 29637205 ~ 29637321 (-)
XLOC_012183 CT027582.2 non-coding upstream 602723 29722085 ~ 29723213 (-)
XLOC_012185 CR377229.1 non-coding upstream 856647 29976009 ~ 30054157 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02025832_02030031 FOXG1, FOXG1A coding CI01000189 null 2025371 ~ 2030031 (-)
rainbow trout (Oncorhynchus mykiss) G1614940 foxg1 non-coding NC_048583.1 CM023237.2 33843498 ~ 33845808 (+)