XLOC_012176


Basic Information

Item Value
gene id XLOC_012176
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 29216066 ~ 29224911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024918
tcccccacaagtccaaagacatgcgctataggggaattgggtaagttaaatagtcgtagtgtgtgtgtgtaaatgaaagtgtatggatgttttttaagtgatggtttgcagctggaagggcatccgctgtgtaaaacatgctagatcagttggcggttcatttcgctgtggcgacaccagattaataaagggattaagccgagaagaaaataaattaatatttatttaacttaatgttaatataacactactgatgatttttagctgaatctgtggtACATGGTGATCCAAATAATGGCAGCGAATGAGGATGGGTTTTTCAGTTTAAGAATAAAGTCCAAATCTAAAGCCATGGCTCCTGATGAAGGTCCTGTAAAGTGAAACGATTGGTCTGTGTaagaaatttaacattatttgcaatattagCATTAATCCACGACCTGGTCAAACAGATGGTTTttgggttgtgagacgtagtttagacgaagttgtcggcgattcttcctattgtaaagtcatgcaatgttcaagtccctgtcgccgatccatcttgcagtgaaaATAAAGCAGCAACGACTACTTTCAAATTGAACACGGCATTAGTTAATGAATAAACTTAGAGACCTGGATATCGACACGTCTCTCTGCAACTGGATTATGGACTTTCTGTCTAAaagacctcagaatgttagatcaggccacatctgctccgCCATCTTCACACTCAAccctggtgtaccacagggctgtgtgctgagcctcTTCCTCTACTTCTTTTTTACTAtcaactgtaggcctgtgaaTAGATCCAAcatcatcatcaaatttgcagatgacaccacagtgattggtctaatcagcaataatgatgagacggcctacagggaggagatacatcATCTGTCCACTTggccactaccaagccgaccaatcacagagcttgtgctacgtgtcgttgcgatgtgtagttacattttttgagaggtgcacgtcagcgacggccacggcgaagggctatgcgtcagcaccgtagcattggcgtgcgtttgacgcagaagtataaatcagccttaaggaacAACACTTTCCTCAGAGCTGTCCCTTTTTCAACTCTATCCCCCACTAATTATTTTGCCCTTCTAATACACCCCCACTGTCCTCATAACTTGTACTCCTCATTATCAttgcactatttaacatttgcacatttaaaaattacacattcattgcactacattagactgattcattcatttgaactgtacatactgtatactgtacactTGTAATTGTTTATCTACCtgtacacttctgattattaatagcaacctgtacatataataatttattttaaatttctgtttatagctaatacaacctgtatataatgttgatagtacatccatctgtaaatatcactaaaGTTTTTCTAtatctgcactttataacttatacctgtatactgcacttgctgctattgcactgctggttagacctaaactgattttcgttgcattgtacttgtacatgtgtaatgacaataaagtttaatctaatctaatacatttcttaacgttttccaatttgtcatttatgtatttaactaatcaaatttgtattatttacagaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACCTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGGTGAGTGCATCATAGTACTAGTGCTTGCACCTGGGCTATAAGAAAGAGCTGCTTTGCTCAGAGGCTGAGGGTGGGGTTACAGTGGCCAATGAGACAAACAGAAACTTTTTTGAGTGCCATATTTGAATTAATAGGTGAACCTAATGTTGAACACATTATGGTCTATTCAAATCACATTGCGCTGCACAAACACTTGCTAGATTCGTGCAAGTAAGTTGCATACTAATTCAATGCAAAAGTATGAATAGaacaatgaacaaaatattttaatatctcaaaaacaaaattaataattttaaagaatttgaaaatagcgttttcactgtatgtcaatggcttttttcttttttcaaatgctttctatttccatatatttatacatgaagttaaaaaaaaatgccattggTCACTACACGCGTAAGAGCAACCTATTATCTTTTGCCTCAAACTCTTGCATTGTAATGGTAATACACACTGTTATTGAACCGTGAGAAAACTATCAGCTTGTTGAGTGTGACATCACATCGCTTGACTATATCAAATAGTattgggagactcaacaaatggtaataataaacatttacaaagcgatgtaatactttttgAAAATCACAATATGTGCCTAATATTAGTATGCCTAAAAATACTAAATGATTAAAAGTTGCATATGTTTCTTAATCCTTTGACGTTCTCAGCATTGGGTTCAGATCTGTGTTTGACCCCAGAGATATTCATTGTttaatccaggggtgtccaagcttggtcctggagggcctgtgtcctgctaagtttagttccaattGCAATTCCAATTCCAAgtccaattagacacacctatgctagctaatcaagctcttactaggtgatCTAGAAactatcttgcctcaacacacctgcaaggatgagcTAAAATcggcagaacactggccctccaagaaggagtttggacacccctgttttagtcTTTctaaacagtattattatttctaaattacaaacaaatagACACAGAATTACAAGTAAACCACTTTTtttcaaaaaagagaaaatttatgtttatgttaagattaaaattactgtttaaaagcaacttgacttgtattacatttttaggtcaatagGTGGCCGTACtaacaatcaaaaatgtattgctgaataattcttcaaaaatgtttaatctaataatgaaacatgacgtttttttaaagtatgaattcaagttttaaatttgtatatttacttatacatttaaaatatacttaatatatttaaattattttggtttaattaatgacacgtaaaaatactaattaaataaatatacatgtctattaatttgtccaattaaatttgttttattatcattgtacttttttttttattatttgcagagGTCCTGTGGGTCTTTGAAAAGTCTTAagtattaaattagatttttacaatttaaggtcataaaaagtcttaaatttgagaggtcttaaattttgcatCAAGGTGTGACATTTCTACTGAATTTCATTCgctgatgtttattttacttgtgCACAATTATTCTTAagccttgtgtgctgttgagAATATTAATTTGGAGACAGATTTCTTTGTTTGAGCTCATGAAAGTGAGACTTTTGCACACATTGTTTTGAAAGttgcttatatacattttttcagacatagtaaacatagtaagtgtatttatgcacacatacacacacacactatcatttACTGTTTATACTCCAAAGAACTCAAaaaatataaaagccagaaacttttttgcaCAGGACTATCTAAATGGTTATGCTGTCAACTGatcatcaacagtaaaaatgacaaaatatacatttaccaAAAAGGGAAGATAACCAGCAACAATGCGTGATTACATGCTGTCATGGATTTGCatccaaaaaatgttttaatggaagtcaatggggcaaaaaaaacagcaactaacataaggaaagggtagtaaatttaaataatacagaagGGTTAAGGTGAACAATTATGACCAGGTGTATTGATATACAGTGGGTCTGATCAGAAGGTATTTCCACATTCAAGTGGCCAAATCTGTGGTTTTCAAGCCTTAAACCTTgagtaatattatttaaataataatgcaataatgctTCCTTGACATTATATTTAGTTTTCAACATATTACTGTATTGTTtgcctttcaattattttttccaaaattatttttagttagtCTTAAAAGATCTTAAATTTACCCTGATAAAACCTGAATAAACCCTGTAAATAATTGTGAAGAAGTCGTACTTGCAGATCATGCACAAATATATGTACGACAATATGCACTCATAAATGATTGTTATAATATTTCACAGGTATCAGTGTGGGTGTGGGGAGGGCCGTTaaggttttggttttatttacatttgatttcttctgactttttacaaaatatgtttcaaaaacaATGTCTAATAATGGTTTCTCTTTATTTAAATATAGGGCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTACACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGGTGTGGTTATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGGAAAATTAATTAGCTGTAGGAACTTGTTTTAaatggtgtgcgtgtgtgtgtgtgagagagagagagagagcatgtgcaTTCTATAAACTTTGTATTTATTCCATTTCATACAACTTGTAGTTGCTCAATTTGTTAATGagttaattttttaagttaattagttgattattttgtgtgttggggtgtgtgtgtgtcataaggATTGCCGTTTGCTCCAAGACTTCATACAGTTTTCTTTTATGTgttggtttaaattaaatgtgctgTACAAACTGTTTATTGTGTTATGGTGTGCTGCTAAAGCATTTTTAGGCAgtgatttatgttttgttaaaaaaatgcatcttaaaaagtcattaaaatgaattcaaaacaGA
>TCONS_00023996
GGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatgaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACCTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGGGCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTACACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGGTGTGGTTATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGGAAAATTAATTAGCTGTAGGAACTTGTTTTAaatggtgtgcgtgtgtgtgtgtgagagagagagagagagcatgtg
>TCONS_00023997
AAAGGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtggcgcagtgggaagcgctctcacctcacagcaagaaggtcgctagttcgattctcgactggatcagttggcatttctgtgtggagtctacatgatctccccgcgttcgcatgggtttcctccgggtgctccggtttcccccacaagtccaaagacatgcgctataggggaattggaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACCTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGGGCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTACACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGGTGTGGTTATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGGAAAATTAATTAGCTGTAGGAACTTGTTTTAaatggtgtgcgtgtgtgtgtgtgagagagagagagagagcatgtg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006364 rRNA processing biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000090708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024918 False 4998 lncRNA 0.34 1 29216066 29221063
TCONS_00023996 False 757 mRNA 0.40 4 29216367 29224908
TCONS_00023997 True 937 nonsense_mediated_decay 0.43 5 29216367 29224911

Neighbor

gene id symbol gene type direction distance location
XLOC_012175 ehd4 coding downstream 2356 29195962 ~ 29213710 (-)
XLOC_012174 sptbn5 coding downstream 21847 29124190 ~ 29194219 (-)
XLOC_012173 foxg1a coding downstream 96704 29117027 ~ 29119362 (-)
XLOC_012172 NA coding downstream 193387 28921572 ~ 29022679 (-)
XLOC_012171 g2e3 coding downstream 404319 28798725 ~ 28811747 (-)
XLOC_012177 traf3 coding upstream 2591 29227502 ~ 29249258 (-)
XLOC_012178 rcor1 coding upstream 26751 29251662 ~ 29271359 (-)
XLOC_012179 AL845481.1 coding upstream 48052 29272963 ~ 29273081 (-)
XLOC_012180 tecpr2 coding upstream 57952 29282863 ~ 29312506 (-)
XLOC_012181 ush2a coding upstream 151943 29376854 ~ 29771639 (-)
XLOC_012166 BX465838.2 non-coding downstream 563554 28643458 ~ 28652512 (-)
XLOC_012165 BX465838.1 non-coding downstream 591890 28624048 ~ 28624176 (-)
XLOC_012163 BX465838.4 non-coding downstream 685484 28530467 ~ 28530582 (-)
XLOC_012158 NA non-coding downstream 1812315 27402643 ~ 27403751 (-)
XLOC_012182 AL928842.1 non-coding upstream 412294 29637205 ~ 29637321 (-)
XLOC_012183 CT027582.2 non-coding upstream 497174 29722085 ~ 29723213 (-)
XLOC_012185 CR377229.1 non-coding upstream 751098 29976009 ~ 30054157 (-)
XLOC_012186 NA non-coding upstream 852420 30077331 ~ 30082713 (-)

Expression


Co-expression Network