XLOC_012178 (rcor1)


Basic Information

Item Value
gene id XLOC_012178
gene name rcor1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 29251662 ~ 29271359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023999
gagagggagagggagagagagagagagagagagagagagagagagagagagagagagctaacgCTAGAGCTAGAGAGCAACGGCACTGCTAGCACTGCAGCCGTATGTGCTTTTATCTGCATCCAAAGCCAAAACTTGTTTTATTAACGCGACCGATGGAAATATAATGCAGTCTACGCACATTTTCAGATCTTCGTAGCCCCGTATTAGCAGTTGGAGGAGTTTGCATCAGTGCACTACGGTGTTATTTGTTTCCGATTAGAGCAGTTGAGCTGAGTTAGCTTAGCTATAGCAAGCAGTCAGCGAGCCCAAGTTCCTTCAAGCAGCTTTGCGTTTCGCTGTCAAGATGCCCGCAATGTTAGAGAAGGGCACCACCGAGATTTCGGGTAAAAGGAGGGGCAGGAACTCTGTAAATAATCCGACCAAAAGTTTTACTTCAAACGGGAACAGTAACAATTCATGGGAGGAAGGAAGTTCGGGTTCCTCAAGTGATGACGAGCATGGTGCGGGCGGGATGAGAGTTGGACCGCAGTATCAGGCAGTTGTTCCCGATTATGACCCCGAAGTAGCAAAGGCGAGCCATGAGAGGGAGAATCTGGGAATGCTGGTGTGGATTCCCAAAACAAGTATTCCAGAGGCCAAATTGGATGAATATATTGCAATAGCCAAAGAAAAACATGGGTACAATATGGAGCAGGCATTGGGCATGCTGTTTTGGCACAAACACAACATTGAAAAATCTTTGGCAGATCTCCCCAACTTCACCCCTTTTCCAGACGAGTGGACAGTTGAAGACAAGGTGCTGTTTGAACAGGGTTTCAGTTTTCATGGAAAGACGTTTCACCGCATCCAGCAGATGcTTCCAGACAAGTCAATTGCAAGCCTGGTTAGGTTTTATTACTCATGGAAGAAAACTCGGAGCAAAACGAGCGTGATGGACCGCCATGCACGCAAACAAAAGAGAGAGCGAGAAGAAAGtgatgaagaagaagaaaatggtAGCACCTCTCCAGGGGATACAGAATTGGAGCCTAATAAGGAAGAGAAAAAAGAGGGAACTTCTGGAACCGAGAAACAAGAATCAAAACCTGCAGTTGTGCAAaagCCAGCAATTCTTGCAGAGAAGCCAATGCATGTAAAGAAGGAAGCCCAGGGTCTTGCAGGGAGGAACCTGAACAGGGCTAAGAAAAAACCTCCCAAAGGAATGTATTTAAGTGCTGATGATGTGACTGCAATGTCCAGCAGTGGCCCGGCTGCAGTTAGTGTGCTGAGAGGGCTGGATATGGAGCTCATTGCCATAAAACGTCAGATTCAGAGCATTAAACAGCACAATAGTGCTCTCAGAGAAAAGCTGGACACTGGTGTGGATGATTTCAGGCCATCTGAGTCGAATCAGAAATTTAATACCCGCTGGACCACAGAAGAGCAGCTGCTTGCAGTGCAAGCTATAAGGAAGTACGGGCGGGATTTCCAGGCCATTTCTGATGTGATCGGCAACAAGTCTGTGGTGCAAGTCAAAAACTTTTTTGTGAATTACCGGCGTCGCTTCAACCTGGACGAGGTGCTGCAGGAGTGGGAAGCAGAGCACGGTGTGGAGGAACGCAAGGGTTTAGATGAAGAGAAGATGGAGGTGTCATCTGAAGACGGCACAACCTCAGGGCCTGCAGAAAACCAAACAGAGGAACAAACGCCAATGGAAACACAGAACCCTTCGGTTTCCTGAGTTCTCCAACAGCGGTTGGTCGAGCTCAGATCGGTTGATAATCGCAGCTGTACGTGAGAGGCATTAAGGCTTCATAGGCCTCAAACGAAGTCTCTTCGTGATGGACATTCCCCCCTGCCCTAAAATAAACCCTCCGACTTTCACTCCCTTGCTGATTCCAGGACTCTGTAACAGGTGCTGCCGCATGGGGGCGCACACTTTATCACGGTAGGAACTAGGACACTTAACCATCACTGCCAACAGTAgagtttctgtgtgttctctACGCGTCTGGCACTCCGGCAGTTCTCCACAAATTATAATTGCGGGAATAACATGTTCATAAACCCACCCTAAAGCCATTGGACAGTTCAATCTAATTGAATTATGGTCTTGAAAGATCTCATGTCTAAAGGAGACACTTTACCATTTCCTTTTTCTTGGAATATTCAGAGTATTTGGTCCTAATACAACATCCCTTTCCAGTTACCTTTGATTTTTTGCTATTGTAGCATATTATCTAgtcatgatttattttaaaatagattttagttGATTTCCGGTTGGattattaagatatttatttCCATAAATGGTGAATAAAAACTGCACTATATAGATAAAAGGAAATGTCAGTGCAGATgaagttaaaataattttaaaagcaattgtaatatacttttaaaaatgaaatggatAGCAGCTCATATATTATTCAAGCGAACTGGTTAGAATTAggttataatatataaatgtttaatcatGGACCCTTGTACATGGTGTATTTGAAATGCATTTTATCTCAAAAGGGTTCTTGGCTGCGGATGTTGATTGCAACAACGGCCGCAGCAAAGAGTTGTAATGGAATGGAAGTATTTGTTTTGTTCTTGCTTGGAACTTTTAAATCTTCTTTTAAACTGTTTTTGCATGTGTGAACAGTTCCTTCATGCCGAGGTCAAGCTTTCTATTCCAAGTGTAGTTAGGAATTTCAAAATATGGCAGCACATTTAAATTTTTACTTCCATTCTTCCAGTTGTTCTTTTTCCCCATTCATCCTTCATTATTATGGTGTTTGGAGATATAAACGGTAGATACACTCATTGTTTCTTTTGTATGTTTAATTTGATAAAggaataagttattttaaatacatgCACTCTCTTTTGTTTTGACCAACTTTTCCCCTCTAATAGCTGTAATGGTACCATACTAGTGTGAACTCCTTTTGAAACTTTTATGTGTGCAGATAACCTGTATATGGTTGGGGTGAaactctgtgtgtctgtgtgtgtgggtgccACTGATGTGCTCATAGACTGGCCTGTATATGTAAACAGTTTATGTCACATTAGTCATAATAAAATTAAGGGAATCATACTA

Function

symbol description
rcor1 Predicted to enable transcription corepressor activity. Acts upstream of or within hemopoiesis and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in eye; head; intestine; and optic tectum. Orthologous to human RCOR1 (REST corepressor 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0016575 histone deacetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko05016 Huntington disease
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050506-79 Predicted to enable transcription corepressor activity. Acts upstream of or within hemopoiesis and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in eye; head; intestine; and optic tectum. Orthologous to human RCOR1 (REST corepressor 1).

Ensembl:

ensembl_id ENSDARG00000031434

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023999 True 3082 mRNA 0.43 13 29251662 29271359

Neighbor

gene id symbol gene type direction distance location
XLOC_012177 traf3 coding downstream 2404 29227502 ~ 29249258 (-)
XLOC_012176 NA coding downstream 26751 29216066 ~ 29224911 (-)
XLOC_012175 ehd4 coding downstream 37952 29195962 ~ 29213710 (-)
XLOC_012174 sptbn5 coding downstream 57443 29124190 ~ 29194219 (-)
XLOC_012173 foxg1a coding downstream 132300 29117027 ~ 29119362 (-)
XLOC_012179 AL845481.1 coding upstream 1604 29272963 ~ 29273081 (-)
XLOC_012180 tecpr2 coding upstream 11504 29282863 ~ 29312506 (-)
XLOC_012181 ush2a coding upstream 105495 29376854 ~ 29771639 (-)
XLOC_012182 AL928842.1 coding upstream 365846 29637205 ~ 29637321 (-)
XLOC_012183 CT027582.2 coding upstream 450726 29722085 ~ 29723213 (-)
XLOC_012172 NA non-coding downstream 228983 28921572 ~ 29022679 (-)
XLOC_012166 BX465838.2 non-coding downstream 599150 28643458 ~ 28652512 (-)
XLOC_012165 BX465838.1 non-coding downstream 627486 28624048 ~ 28624176 (-)
XLOC_012163 BX465838.4 non-coding downstream 721080 28530467 ~ 28530582 (-)
XLOC_012185 CR377229.1 non-coding upstream 704650 29976009 ~ 30054157 (-)
XLOC_012186 NA non-coding upstream 805972 30077331 ~ 30082713 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02097314_02102754 RCOR1 coding CI01000189 null 2096812 ~ 2102865 (-)