XLOC_012184 (esrrga)


Basic Information

Item Value
gene id XLOC_012184
gene name esrrga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 29797876 ~ 29902187 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024007
GCTGTCACCGGGAGAACGGTCCTGTTAATTGCACTGCTCAGTCACGGAAGGgagagagaggaggaggagacacagagagaaagagagagagagaaaactttaATTTATAGAAGAGGTTTGCTCAAACGATGATCGCAGAGCGCACATGGATTCGGTAGAACTTTCGCTCCCTGAGTGTTTTTCCCTGCACTCCGATCAACAAATGAATTTATCAAAGGCCCAAGTTAATAGCGAAGATAAGTACGCCAAATGCGGCGCTTGGAGAACGCAACAGCAATACGACATCGAGGCCAGTCACATGCGTGATGCACATGCTCTATATAACCAAAGGCTGCTCTGCAGAATGTCCAACAAGGACCGCCACATTGAGTCGAGTTGCCCCTCCTACATAAAGACGGAACCTTCCAGCCCCGCCTCACTAACGGACAGCGTAAATCACCACAGCCCCGGCGGCTCCTCAGACGCCAGCGGTAGCTACAGCTCCACCATGAACGGCCATCAGAACGGCCTGGACTCACCCACTCTTTATGGCCCAACAGGCGCTCTGGGTCCCAGCGGAACTGGTGCCAAGCGTTATGAGGACTGTTCCAGCACCATCACGGAGGACTCACAGATTAAATGCGAGTACATGCTGAACTCCATGCCCAAACGCCTGTGCCTGGTGTGCGGGGACATCGCTTCTGGTTACCACTATGGCGTTGCCTCCTGCGAGGCCTGCAAGGCCTTTTTCAAGAGGACCATTCAAGGAAACATCGAGTACAGCTGCCCCGCCACCAATGAATGTGAGATCACCAAACGTAGAAGGAAGTCCTGCCAAGCCTGCCGCTTCATGAAGTGTCTGACCGTCGGCATGATGCGAGAAGgTGTTCGACTGGACCGTGTTCGCGGTGGAAGACAGAAATACAAACGCCGGATAGATGCAGAAAACAGCCCCTATTTGAACCCTCAACTGGCTCTGCCTCCCAAAAAGCCATATAACAAGATTGTGTCTCACTTGCTGGTGGCGGAGCCGGAGAAGATCTACGCCATGCCTGACCCGACAGTGCCCGACAGCGACATCAAAGCCCTGACCACGCTCTGCGACCTGGCAGACCGAGAGCTGGTGGTCAACATAGGCTGGGCCAAGCATATCCCAGGCTTTTCCACACTGTCACTGGCGGATCAGATGAGTCTTCTGCAGAGTGCGTGGATGGAGATCCTGATCCTACGTGTCGTCTACCGCTCACTGTCTTTTGAGGACAAGTTGGTGTACGCTGAGGACTACATCATGGATGAGGATCAATCCAAACTGGCGGGTCTGCTCGACCTGAATAATGCCATTCTTCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTGGAGAAGGAGGAGTTTGTCACTCTTAAAGCTATAGCCCTGGCTAATTCAGattCCATGCATATAGAGGATGTGGAAGCTGTGCAGAAGCTCCAGGATGTGTTGCACGAGGCCCTGCAGGACTATGAGGCAGGTCAACATGTAGAGGACCCGCGCCGGGCCGGCAAGCTGCTCATGACCCTACCACTGCTCCGGCAAACGTCCACCAAGGCAGTGCAGCACTTCTACAGCATCAAACAGGACGGCAAAGTGCCCATGCACAAACTGTTTCTGGAGCTGCTGGAGGCCAAGGTGTAACTCCGCCCCCCCCCAGCCCCACCCCATACCCACAGAGAGCTGGAGGTGGGATGTCTCTGACTCCGCCCCTTCACCCAGCCAGACACTGACTAACTCTCTGCCGCAGATCGTGAAACATTTGTCTATAAACTTTatcaaataataactaaaaacatAACCTTAACGGTACTTCTAATTACTGACAATGATGCGTAAATATAAGAATgatttaaaatgtgattattgAGAAAGACATACAAACTATGAAGTGGGAAAAAAGTGACAGCAGTGAAACCAGCCGTTGAAACTTGTTCCTCTCGAAAATCTGATGCTGAGGTTTTTCTTTTTGTGCTATTGAGAC
>TCONS_00024008
ATGTCCAACAAGGACCGCCACATTGAGTCGAGTTGCCCCTCCTACATAAAGACGGAACCTTCCAGCCCCGCCTCACTAACGGACAGCGTAAATCACCACAGCCCCGGCGGCTCCTCAGACGCCAGCGGTAGCTACAGCTCCACCATGAACGGCCATCAGAACGGCCTGGACTCACCCACTCTTTATGGCCCAACAGGCGCTCTGGGTCCCAGCGGAACTGGTGCCAAGCGTTATGAGGACTGTTCCAGCACCATCACGGAGGACTCACAGATTAAATGCGAGTACATGCTGAACTCCATGCCCAAACGCCTGTGCCTGGTGTGCGGGGACATCGCTTCTGGTTACCACTATGGCGTTGCCTCCTGCGAGGCCTGCAAGGCCTTTTTCAAGAGGACCATTCAAGGAAACATCGAGTACAGCTGCCCCGCCACCAATGAATGTGAGATCACCAAACGTAGAAGGAAGTCCTGCCAAGCCTGCCGCTTCATGAAGTGTCTGACCGTCGGCATGATGCGAGAAGgTGTTCGACTGGACCGTGTTCGCGGTGGAAGACAGAAATACAAACGCCGGATAGATGCAGAAAACAGCCCCTATTTGAACCCTCAACTGGCTCTGCCTCCCAAAAAGCCATATAACAAGATTGTGTCTCACTTGCTGGTGGCGGAGCCGGAGAAGATCTACGCCATGCCTGACCCGACAGTGCCCGACAGCGACATCAAAGCCCTGACCACGCTCTGCGACCTGGCAGACCGAGAGCTGGTGGTCAACATAGGCTGGGCCAAGCATATCCCAGGCTTTTCCACACTGTCACTGGCGGATCAGATGAGTCTTCTGCAGAGTGCGTGGATGGAGATCCTGATCCTACGTGTCGTCTACCGCTCACTGTCTTTTGAGGACAAGTTGGTGTACGCTGAGGACTACATCATGGATGAGGATCAATCCAAACTGGCGGGTCTGCTCGACCTGAATAATGCCATTCTTCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTGGAGAAGGAGGAGTTTGTCACTCTTAAAGCTATAGCCCTGGCTAATTCAGattCCATGCATATAGAGGATGTGGAAGCTGTGCAGAAGCTCCAGGATGTGTTGCACGAGGCCCTGCAGGACTATGAGGCAGGTCAACATGTAGAGGACCCGCGCCGGGCCGGCAAGCTGCTCATGACCCTACCACTGCTCCGGCAAACGTCCACCAAGGCAGTGCAGCACTTCTACAGCATCAAACAGGACGGCAAAGTGCCCATGCACAAACTGTTTCTGGAGCTGCTGGAGGCCAAGGTGTAA

Function

symbol description
esrrga Enables DNA-binding transcription factor activity. Acts upstream of or within otic vesicle development and transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in basal plate midbrain region; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 35. Orthologous to several human genes including ESRRG (estrogen related receptor gamma).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0071599 otic vesicle development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030821-2 Enables DNA-binding transcription factor activity. Acts upstream of or within otic vesicle development and transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in basal plate midbrain region; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 35. Orthologous to several human genes including ESRRG (estrogen related receptor gamma).

Ensembl:

ensembl_id ENSDARG00000004861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024007 False 1991 mRNA 0.52 9 29797876 29902187
TCONS_00024008 True 1308 mRNA 0.55 6 29798216 29877336

Neighbor

gene id symbol gene type direction distance location
XLOC_012181 ush2a coding downstream 26237 29376854 ~ 29771639 (-)
XLOC_012183 CT027582.2 coding downstream 74663 29722085 ~ 29723213 (-)
XLOC_012182 AL928842.1 coding downstream 160555 29637205 ~ 29637321 (-)
XLOC_012180 tecpr2 coding downstream 485370 29282863 ~ 29312506 (-)
XLOC_012179 AL845481.1 coding downstream 524795 29272963 ~ 29273081 (-)
XLOC_012185 CR377229.1 coding upstream 73822 29976009 ~ 30054157 (-)
XLOC_012186 NA coding upstream 175144 30077331 ~ 30082713 (-)
XLOC_012187 si:dkey-27l15.1 coding upstream 237912 30140099 ~ 30225524 (-)
XLOC_012188 NA coding upstream 375944 30278131 ~ 30280713 (-)
XLOC_012189 NA coding upstream 404028 30306215 ~ 30369525 (-)
XLOC_012176 NA non-coding downstream 572965 29216066 ~ 29224911 (-)
XLOC_012172 NA non-coding downstream 775197 28921572 ~ 29022679 (-)
XLOC_012190 NA non-coding upstream 496762 30398949 ~ 30409759 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02404459_02433659 ESRRG, ESRRGA coding CI01000189 null 2404459 ~ 2433659 (-)
bowfin (Amia calva) AMCG00003669 esrrga,LOC107719475 coding CM030121.1 CM030121.1 14056451 ~ 14067694 (+)