CI01000218_00185345_00187069 (H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421)


Basic Information

Item Value
gene id CI01000218_00185345_00187069
gene name H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000218
NCBI id null
chromosome length 266553
location 184787 ~ 187489 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000218_00185345_00187069.mRNA
ACACTAAAAACCATGGGAAACCCCGTGAAACTCGTCTGACAACTACTGAAATGAATCATTGACGTAATGGAGGGTCAGAGTCAGACCAAAACATTTGATTGCAGTTCTGTTAATTATTTACAAAAAAACTACTTGACAACAGCACGAAAAGGCCTTTATATATTCGGTTTGGCTTTGACTCTTTTAGAAATAAAAATAATAATTTTAATAATACAGATTTATAATTAAAATAATACTTATTAGAAATGCAATAATTGTACCCTAAGCTTGTCTAATTTATGTAAAGGCTCTGTTTATTTACCATTTGGTACTGTTAACCTTATTATATTAACGTTACATATTTAAACATGTGCTCAAGCAGCATCAAGTTTGTTTGTGAAGTGTGTAATATTGTTCAGTTTCAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGTGCCTGAGCCTCCGTCTCCTCCTCGTCCGACTCTGTCTTCATCTCTGTGTCTGTTCTGTGTGTGTATTTGTGTTGGTTCGTCCTCTCAGAAGTCACGTGTCATGTGACTGTCTGTGCGAGAGCTCCAGCCCTCAGGCACTAAATCAAGCGTCAGTGGGGCTTTGATCTGAATCAAGGGACAGTCTCACTTCGGGTGCTAACCTCCTCACTGGAACCGTCGTCAAACACTCTTCTTCAAATATCTCTGTTGTTTTGAGTCTTTTTGAATGATTTTCTTTCGTGTGATGTCTGAGACTGTCAGGTGGGTGTGTGATTTCAGTCGAGCATTCTGGGATTGTGTCCCAATGTCCTTGTGTTATTGATGAGCGTATGTAGCAACGGACTGTAGCTATTTTATACCATTTGATATATTTCTTCATGAGTTGTTTAGTGCGATATTTAGCAGACACTCACTCAGGTTTTTTCTACACCCTTTCATGGTTTTTATCACGAGGTGATGAATTCTGTTTGTTTTTGTAAGTGTGCAAGTCTAAAGAGCAAATCTTTGTACTAGACAGACAATAAA

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3c Orthologous to human H3-3B (H3.3 histone B).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000218_00185345_00187069.mRNA False 1389 mRNA 0.45 3 184787 187489

Neighbor

gene id symbol gene type direction distance location
CI01000218_00173197_00175957 EIF3K, IF3C coding downstream 8539 173127 ~ 176248 (-)
CI01000218_00167659_00171329 NA coding downstream 13458 167094 ~ 171329 (-)
CI01000218_00155323_00156947 NA coding downstream 27840 155196 ~ 156947 (-)
CI01000218_00119041_00133536 INPPL1A, INPPL1 coding downstream 51251 119041 ~ 133536 (-)
CI01000218_00064161_00064417 NA coding downstream 120314 64076 ~ 64473 (-)
CI01000218_00189439_00192976 NA coding upstream 516 187984 ~ 193030 (-)
CI01000218_00198649_00204828 NA coding upstream 10745 198234 ~ 204828 (-)
CI01000218_00214048_00223824 MAP4K1 coding upstream 26559 214048 ~ 223824 (-)
G393102 NA non-coding downstream 23421 159503 ~ 161366 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 misc CM030125.1 CM030125.1 38697395 ~ 38701074 (-)