G393070


Basic Information

Item Value
gene id G393070
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000218
NCBI id null
chromosome length 266553
location 177176 ~ 178218 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU450095
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGTGCCTGAGCCTCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA
>TU450097
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGTGCCTGAGCCTCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA
>TU450098
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGTGCCTGAGCCTCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA
>TU450099
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGTTTCAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGTGCCTGAGCCTCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA
>TU450096
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGTGCCTGAGCCTCCGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA
>TU450100
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGCGCCTGAGCCTCCGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA
>TU450094
GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGTTTCAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGCGCCTGAGCCTCCGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU450095 False 904 TUCP 0.49 1 177176 178079
TU450097 False 896 TUCP 0.49 1 177176 178071
TU450098 False 898 TUCP 0.49 1 177176 178073
TU450099 False 902 TUCP 0.49 1 177176 178077
TU450096 False 902 TUCP 0.49 1 177176 178077
TU450100 True 998 TUCP 0.49 1 177176 178173
TU450094 True 1043 TUCP 0.49 1 177176 178218

Neighbor

gene id symbol gene type direction distance location
CI01000218_00173197_00175957 EIF3K, IF3C coding downstream 928 173127 ~ 176248 (-)
CI01000218_00167659_00171329 NA coding downstream 5847 167094 ~ 171329 (-)
CI01000218_00155323_00156947 NA coding downstream 20229 155196 ~ 156947 (-)
CI01000218_00119041_00133536 INPPL1A, INPPL1 coding downstream 43640 119041 ~ 133536 (-)
CI01000218_00064161_00064417 NA coding downstream 112703 64076 ~ 64473 (-)
CI01000218_00198649_00204828 NA coding upstream 10151 198234 ~ 204828 (-)
CI01000218_00214048_00223824 MAP4K1 coding upstream 25965 214048 ~ 223824 (-)
G393102 NA non-coding downstream 15810 159503 ~ 161366 (-)

Expression


Co-expression Network