XLOC_012201 (BX571712.1)


Basic Information

Item Value
gene id XLOC_012201
gene name BX571712.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31096326 ~ 31097541 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024039
GAACATGGGAGCAAGTAAAGGTAAAATACAAGAACATTCTACAAAAtgCTACTAGGAAAAGGTGTGAACAAAAAAAACGGGTGGTGGTCCTGCACCTCCACCTCATACCCCGGCAGAAGAGCTTGCCCTTGGTTTTAATGCAAACAGGCCAATTGTTCAGGGCATACCAGGGGGCAGCTCTTCCCTAGAGCCACAGCCAGGGACCAGTAAGGGCACCACAGTCATCACTGTTTCTAATGATACACCTACACTTATATCAATTCCATTTGAAGTTGTGGCATAAGTGAACAGTGAGGAGACTCTTTCAGATGAGTGTTTTGAGGAGTTGACAGAGTCCATGCCTTCTAAGAGGCCTTTTGACCGGCACAGTGATAAAGAGGGTGACATTCGTTCTCTATATAAGAGGAGCCTCCAACATAAAGTGGAGTATTTAgagcttaaaaaacaaaaactacaaggAGAAATCGAGCTGCAGCaactaatgaaaacaaaaatggaGCTAGAAATACAATTGTTGCAAAAAGAACTTCAGAGTAAGCAAAagatgacgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024039 True 563 lncRNA 0.43 7 31096326 31097541

Neighbor

gene id symbol gene type direction distance location
XLOC_012200 eml1 coding downstream 13945 30976484 ~ 31082381 (-)
XLOC_012199 evla coding downstream 120348 30897292 ~ 30975978 (-)
XLOC_012198 yy1a coding downstream 233074 30857008 ~ 30863252 (-)
XLOC_012197 gdf7 coding downstream 256988 30835076 ~ 30839338 (-)
XLOC_012196 zgc:194392 coding downstream 393915 30700627 ~ 30702411 (-)
XLOC_012202 pkdccb coding upstream 53674 31151215 ~ 31164219 (-)
XLOC_012203 BX571712.2 coding upstream 84409 31181950 ~ 31185243 (-)
XLOC_012204 rpusd2 coding upstream 107523 31205064 ~ 31212420 (-)
XLOC_012205 pcmtl coding upstream 116626 31214167 ~ 31221774 (-)
XLOC_012206 bahd1 coding upstream 178896 31276437 ~ 31344400 (-)
XLOC_012193 NA non-coding downstream 503268 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 686567 30398949 ~ 30409759 (-)
XLOC_012189 NA non-coding downstream 726801 30306215 ~ 30369525 (-)
XLOC_012188 NA non-coding downstream 815613 30278131 ~ 30280713 (-)
XLOC_012186 NA non-coding downstream 1013613 30077331 ~ 30082713 (-)
XLOC_012208 BX539317.1 non-coding upstream 286893 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1030356 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1148588 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 2036278 33133819 ~ 33138376 (-)

Expression


Co-expression Network