XLOC_012204 (rpusd2)


Basic Information

Item Value
gene id XLOC_012204
gene name rpusd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31205064 ~ 31212420 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024045
ACAAGACGGAAATGTATCGCTAAACCGCTGAATAGCATGGTTCACGTGTGGAAGATAACACACATACAAGCATTAACTTTATTAAGATTTGGAAGAAGAcaaaatagtgaatttataaaaCGCGTGTATCAGAACAGAAACGTGAGTGTTGAAACTCAGAGAACCCATTGTTCAGTGCTGAATGTCAGGAGAAACAGCACGCAAGTAGAGTCCTCAAAACACCCGGTGAACACACATTTATCACTGTACGACATGGACAATAAAGGGGAAGAAGGCGGCGGGGACACGGACAGCACTGTCAAAACAAGCTGCGGGAAGCGTAAAAACGAGGAGACGGATGAGGCTGCAGGACAATGCAGCGGTAGGAAGCGAAAGCGTGGCGGCGGAAAGCAGCTGCGGCCCGGTGAGCGCTACGTGCCTCCCCCGCAGAAGCGCAACACCGGCGTCAGCTTCAACCAGGAGCACTTCGCGGAAACCTCCTACTATTTTGAAGGCGGTCTGCGAAAAGTGCACCCCTATTATTTTGACTTTAAGTCTTACTGTAAGGGGCGCTGGATTGGTAAAACTCTTCTGGACGTTTTTAAGAAGGAATTTCGGGCGGAATCTTTGGATTACTACAATGCTGCTGTCAAAGAGGGGCGAATTAAACTGAATGAAACCCCTGTGGATGACCTGAATGTGGTATTGAAGAACAATGACTTGTTGAGGAACACTGTTCATCGTCATGAGCCACCGGTGTGCGGCCAGCCCTTAAAGCTTCTGGTGGATGATGGTGAAGTGGTGGTGGTGGATAAACCCTCCTCACTGCCTGTCCATCCCTGCGGTCGCTACCGACACAACACTGTCATCTTCATTCTGGGAAAGGAGAAAGGCCTTGTTGGCCTGCACACTGTTCATCGTCTGGACCGCCTCACCTCAGGTGTGCTGCTTTTTGCACGAACACTCGAGGTCTCCAAAAAACTGGATGTGATGGTTCGAGAGAGACAGTTAGAGAAAGAGTATGTGTGTCGTGTGGAGGGAGAGTTTCCAGAGGCAGAGGTTGTTTGTGAGGAGCCCATCCTGGTGGTGTCTTTTCGCGTAGGTCTCTGTAGGGTTGATCCCAAAGGCAAAGAGTCCCGCACCATCTTCCAGAGACTGAGCTTTAACGGACGCTCCAGTGTGGTCCGCTGTCGGCCACTCACAGGACGCACGCACCAGATTCGGGTTCACCTTCAGTTCCTGGGCTTCCCAATTCTCAACGATCCCATTTACGGATCTTCCGCGTGGGGTCCGAACAGAGCGAAAGGAGGGCTGGTGGGTATGAGCGACGAGGAGCTCCTAGAGGCTCTCATCGAAGAACATAGGTCAAAGGAGAGCCTGCACTTGCTGGATTTGCCTGATGAAGAGGTTTCAGGAAAGACAAAGTGTAAGGATGGCGCTCAAGGACGCAACGAGCAAATAACGGCGATCGAGTCAAGCAGTGGCTCCAGTGAAGTGTCACTGGATGAAGTGAAGGCAGAAAGTAGGCAAGTTGTTCAGCAGAGCACATCTGAGTCTGTGGGAGAGATAAACGGGGCACGCAAAGATAAGGATTTGGCCTCCGATGATGCCAGCAGAACTGGGAGATCAAAGGATTTTGTTAGAGATCATTTATGTGGAGAGTGTAAAATCGTAAGGCCTGACCCGACAGAGAAAGAGTTGATTATGTATCTGCATGCGCTGCGCTATAAGGGACCTGATTTTGAATACTCTACTCAACTGCCCGACTGGGCTAAAGAAGACTGGATTCAGGATTAAGCTAAAGTCAGATGTGTTTATGCAGTTTTGTTGGCGGACTCTACCACACAATGATTATTCAGTTATTAAATATGTTCGAATTGGGATTGACTTAAAAGTTGGCTATTTTTGGTCAGTCATGTGGCGCGTTGCTGTCTTTCATTTCTTTCAGTTACTTGTACTTGGAAAGGACATCTGACATGAACATACAGCAATAAAGCAGACTTTATTATACAAAAA

Function

symbol description
rpusd2 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD2 (RNA pseudouridine synthase domain containing 2).

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0000455 enzyme-directed rRNA pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120411-43 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD2 (RNA pseudouridine synthase domain containing 2).

Ensembl:

ensembl_id ENSDARG00000060992

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024045 True 1995 mRNA 0.48 3 31205064 31212420

Neighbor

gene id symbol gene type direction distance location
XLOC_012203 BX571712.2 coding downstream 19821 31181950 ~ 31185243 (-)
XLOC_012202 pkdccb coding downstream 40845 31151215 ~ 31164219 (-)
XLOC_012201 BX571712.1 coding downstream 107523 31096326 ~ 31097541 (-)
XLOC_012200 eml1 coding downstream 122683 30976484 ~ 31082381 (-)
XLOC_012199 evla coding downstream 229086 30897292 ~ 30975978 (-)
XLOC_012205 pcmtl coding upstream 1747 31214167 ~ 31221774 (-)
XLOC_012206 bahd1 coding upstream 64017 31276437 ~ 31344400 (-)
XLOC_012207 ivd coding upstream 134140 31346560 ~ 31360956 (-)
XLOC_012208 BX539317.1 coding upstream 172014 31384434 ~ 31384548 (-)
XLOC_012209 ltk coding upstream 188164 31400584 ~ 31483469 (-)
XLOC_012193 NA non-coding downstream 612006 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 795305 30398949 ~ 30409759 (-)
XLOC_012189 NA non-coding downstream 835539 30306215 ~ 30369525 (-)
XLOC_012218 NA non-coding upstream 915477 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1033709 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 1921399 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1933174 33145594 ~ 33162478 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03255223_03258558 RPUSD2 coding CI01000189 null 3254942 ~ 3258558 (-)