XLOC_012207 (ivd)


Basic Information

Item Value
gene id XLOC_012207
gene name ivd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31346560 ~ 31360956 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024053
AGTAAAGCTCTAGCAGCGGCAATGAATCACGTCGACTACAGAAGAGAAGAAGAGCGGAATTCCTTCTGTTTACTGTGGTGATGCTCCCAGTGCTGTACTCTTCACCTGCCGCACTCTTGTACCTGTTGCATAATTCACCTTTCTCCAGTTGTACTCTGTCTTCACCCTGAAGTCACTGTAACTAAATTCCCTAAAATGTTTGCTGTCAGAAGAGCGCTGCGTGTTTGTCAGGGAGTCGTGAAGGTCAGTGCTGGTGTTTCCCGTCGCGGATGCGCTGGAGCGGTTCCAGTGGACGACATTGTGAACGGACTGACTGAGGAACAGATCCAGCTCAGACAGACAGTCCAGAGATTCTTCCAGGAGAAACTCGCTCCCTACGCCGATGAGATTGACAAGAAAAACGAGTTTCCTCAGATGAGGGAGTTTTGGAAGGAGATGGGTGACCTTGGACTGCTTGGAGTTACTGCACCAGTGGAGTTCGGGGGAACAGGACTGGGCTACCTTGATCATGTGATTATTATGGAGGAGATCTCCCGTGTATCTGCCGCTATTGGACTCAGCTATGGAGCGCATTCCAACTTATGTGTAAATCAGATGGTTCGACATGGAAACCAGAAGCAGAAAGAGAAGTACATGCCTAAGTTGTTGACTGGTGAACATGTGGGTGCTCTGGCCATGAGTGAGTCTAATTCTGGCTCTGATGTAGTGTCTATGAAACTGACAGCAAAAAAACAAGggGATCACTATGTGTTAAACGGTAACAAATTCTGGATTACGAATGGATCAGATGCAGATGTTCTGATCGTGTATGCTAAGACAGACCCAGAAGCAGTAGCTCGTGGCATCACTGCTTTCATTGTTGAGAAGGGTATGCCAGGATTCAGCTCAGCGCAGAAGCTGGATAAACTGGGAATGAGAGGATCCAGCACTTGTGAACTCGTCTTTGAAGACTGCAAGATTCCTGAGGAAAATGTATTGGGCCCTTTAAATAAAGGAGTCTATGTTTTGATGAGTGGTTTGGACCTGGAAAGACTCGTCCTGGCTTCTGGACCTGTTGGCATCATGCAAGCTGTGCTTGATCATGCAATTCCTTATCTACATGTTCGCGAAGCTTTTGGACAGAAAATTGGCCACTTTCAGCTGATGCAAGGAAAAATGGCTGACATGTACACACGCCTTAGTTCCTGTCGACAGTATTTATACAACGTTGCTCGTGCTTGTGACAAAGGCCATTTCAGTGCTAAGGACTGTGCTGGGGTAATCCTTTATTGTGCTGAGAATGCAACTCAAGTTGCCTTGGATGGGATTCAATGCCTGGGTGGAAATGGTTACATCAATGACTACCCAATGGGCCGGTTCTTAAGAGACGCTAAACTTTATGAGATTGGTGCAGGAACCAGTGAGATCAGAAGGATTATCATTGGCAGATCTTTCAACGCCATGTTTAAATAAAGAGTCAGGATTGAGGATCTGATCCTGCGCAGACTGTGTGCAGTAGCcagaaatttcattttattaggcTAAACACTCATCTGGCATGCTGATTTTAacaccaatcagattcaagataCAAAACATGTCTAAAATGTGGATGTCAAATTGTACAAGCAATAGGTAGTATTACATTCAAGAGCAAATGCAGTGGTAAGAGATAAACTATTTAGATCAAGATGTTTTTAAAGGACTGACTATGAACTGAATTGATCTCTAACAACTAGCTGCAGTTAATTCCCAGTGGAAAAAGCAGTGGTGATGTAAACAGCTGAGACCATTCATTTGTCCTGAAAGCCTTTGTCATGTGACTGGGGGGTGTTTCTGTAGCACATGGTACATGTAATTACcttgtttgttttcctttttttaaaaacacggTCACCCTTTGTGGGCTGTTTTGCATATCACTTCTGACCCCATaacatgattttgttttgtttttttcatgtgtaCAGACAGATCATTTCTTTAAAGAGTTTGTAATTcaaacattcatttgtttttcatttttaagaagTTGCACTTTTTTGAAGCAAGCTGTTATGTTGGTCTGTGAAACCTTTGGGTTTTCTGAGCCTTATTAAATCATCGCTCCATGCATTTGATTGTAATAcgattgtttaaaataaatgtaatctccCTTCAA
>TCONS_00024054
GGGAATGAGAGGATCCAGCACTTGTGAACTCGTCTTTGAAGACTGCAAGATTCCTGGTGTGTTAGTCTTCATGCATATTGGTGAGGCTAAATATGTCTCAGGCTCCAAACTTAATCTGAAAACGTTTTGTTGTGGTTTCAGAGGAAAATGTATTGGGCCCTTTAAATAAAGGAGTCTATGTTTTGATGAGTGGTTTGGACCTGGAAAGACTCGTCCTGGCTTCTGGACCTGTTGGgtaatttttgttgtgtttatttccAGTAGCATTTCCAGTTGTAGTTGTTTGTTTGATGACTTTACACATTCCCTCAGCATCATGCAAGCTGTGCTTGATCATGCAATTCCTTATCTACATGTTCGCGAAGCTTTTGGACAGAAAATTGGCCACTTTCAGCTGATGCAAGGAAAAATGGCTGACATGTACACACGCCTTAGTTCCTGTCGACAGTATTTATACAACGTTGCTCGTGCTTGTGACAAAGGCCATTTCAGTGCTAAGGACTGTGCTGGGGTAATCCTTTATTGTGCTGAGAATGCAACTCAAGTTGCCTTGGATGGGATTCAATGCCTGGGTG
>TCONS_00024933
aaacaaaacacctgaAATGTCGCTGTTCTGTGCTCTGTTGACGTGCCTTGCGTATGAGCTGAAAGACGGGCAGTTATCAGTTTAATGCGGTAAATGTGAGTTAAAGCTTGACATTAAAAAGCTCAGACAGACAGTCCAGAGATTCTTCCAGGAGAAACTCGCTCCCTACGCCGATGAGATTGACAAGAAAAACGAGTTTCCTCAGATGAGGGAGTTTTGGAAGGAGATGGGTGACCTTGGACTGCTTGGAGTTACTGCACCAGTGGAGTTCGGGGGAACAGGACTGGGCTACCTTGATCATGTGATTATTATGGAGGAGATCTCCCGTGTATCTGCCGCTATTGGACTCAGCTATGGAGCGCATTCCAACTTATGTGTAAATCAGATGGTTCGACATGGAAACCAGAAGCAGAAAGAGAAGTACATGCCTAAGTTGTTGACTGGTGAACATGTGGGTGCTCTGGCCATGAGTGAGTCTAATTCTGGCTCTGATGTAGTGTCTATGAAACTGACAGCAAAAAAACAAGggGATCACTATGTGTTAAACGGTAACAAATTCTGGATTACGAATGGATCAGATGCAGATGTTCTGATCGTGTATGCTAAGACAGACCCAGAAGCAGTAGCTCGTGGCATCACTGCTTTCATTGTTGAGAAGGGTATGCCAGGATTCAGCTCAGCGCAGAAGCTGGATAAACTGGGAATGAGAGGATCCAGCACTTGTGAACTCGTCTTTGAAGACTGCAAGATTCCTGGTGTGTTAGTCTTCATGCATATTGGTGAGGCTAAATATGTCTCAGGCTCCAAACTTAATCTGAAAACGTTTTGTTGTGGTTTCAGAGGAAAATGTATTGGGCCCTTTAAATAAAGGAGTCTATGTTTTGATGAGTGGTTTGGACCTGGAAAGACTCGTCCTGGCTTCTGGACCTGTTGGgtaatttttgttgtgtttatttccAGTAGCATTTCCAGTTGTAGTTGTTTGTTTGATGACTTTACACATTCCCTCAGCATCATGCAAGCTGTGCTTGATCATGCAATTCCTTATCTACATGTTCGCGAAGCTTTTGGACAGAAAATTGGCCACTTTCAGCTGATGCAAGGAAAAATGGCTGACATGTACACACGCCTTAGTTCCTGTCGACAGTATTTATACAACGTTGCTCGTGCTTGTGACAAAGGCCATTTCAGTGCTAAGGACTGTGCTGGGGTAATCCTTTATTGTGCTGAGAATGCAACTCAAGTTGCCTTGGATGGGATTCAATGCCTGGGTG
>TCONS_00024055
aaacaaaacacctgaAATGTCGCTGTTCTGTGCTCTGTTGACGTGCCTTGCGTATGAGCTGAAAGACGGGCAGTTATCAGTTTAATGCGGTAAATGTGAGTTAAAGCTTGACATTAAAAAGCTCAGACAGACAGTCCAGAGATTCTTCCAGGAGAAACTCGCTCCCTACGCCGATGAGATTGACAAGAAAAACGAGTTTCCTCAGATGAGGGAGTTTTGGAAGGAGATGGGTGACCTTGGACTGCTTGGAGTTACTGCACCAGTGGAGTTCGGGGGAACAGGACTGGGCTACCTTGATCATGTGATTATTATGGAGGAGATCTCCCGTGTATCTGCCGCTATTGGACTCAGCTATGGAGCGCATTCCAACTTATGTGTAAATCAGATGGTTCGACATGGAAACCAGAAGCAGAAAGAGAAGTACATGCCTAAGTTGTTGACTGGTGAACATGTGGGTGCTCTGGCCATGAGTGAGTCTAATTCTGGCTCTGATGTAGTGTCTATGAAACTGACAGCAAAAAAACAAGggGATCACTATGTGTTAAACGGTAACAAATTCTGGATTACGAATGGATCAGATGCAGATGTTCTGATCGTGTATGCTAAGACAGACCCAGAAGCAGTAGCTCGTGGCATCACTGCTTTCATTGTTGAGAAGGGTATGCCAGGATTCAGCTCAGCGCAGAAGCTGGATAAACTGGGAATGAGAGGATCCAGCACTTGTGAACTCGTCTTTGAAGACTGCAAGATTC
>TCONS_00024056
GTGCCAGTAAAGCTCTAGCAGCGGCAATGAATCACGTCGACTACAGAAGAGAAGAAGAGCGGAATTCCTTCTGTTTACTGTGGTGATGCTCCCAGTGCTGTACTCTTCACCTGCCGCACTCTTAGCGCTGCGTGTTTGTCAGGGAGTCGTGAAGGTCAGTGCTGGTGTTTCCCGTCGCGGATGCGCTGGAGCGGTTCCAGTGGACGACATTGTGAACGGACTGACTGAGGAACAGATCCAGCTCAGACAGACAGTCCAGAGATTCTTCCAGGAGAAACTCGCTCCCTACGCCGATGAGATTGACAAGAAAAACGAGTTTCCTCAGATGAGGGAGTTTTGGAAGGAGATGGGTGACCTTGGACTGCTTGGAGTTACTGCACCAGTGGAGTTCGGGGGAACAGGACTGGGCTACCTTGATCATGTGATTATTATGGAGGAGATCTCCCGTGTATCTGCCGCTATTGGACTCAGCTATGGAGCGCATTCCAACTTATGTGTAAATCAGATGGTTCGACATGGAAACCAGAAGCAGAAAGAGAAGTACATGCCTAAG

Function

symbol description
ivd Predicted to enable isovaleryl-CoA dehydrogenase activity. Predicted to be involved in leucine catabolic process. Is expressed in alar plate midbrain region; digestive system; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and isovaleric acidemia. Orthologous to human IVD (isovaleryl-CoA dehydrogenase).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008470 isovaleryl-CoA dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

ZFIN:

id description
ZDB-GENE-030616-262 Predicted to enable isovaleryl-CoA dehydrogenase activity. Predicted to be involved in leucine catabolic process. Is expressed in alar plate midbrain region; digestive system; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and isovaleric acidemia. Orthologous to human IVD (isovaleryl-CoA dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000042853

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024053 False 2140 mRNA 0.43 12 31346560 31360951
TCONS_00024054 False 575 lncRNA 0.43 3 31349711 31352247
TCONS_00024933 False 1274 lncRNA 0.45 9 31349711 31360599
TCONS_00024055 False 752 processed_transcript 0.46 7 31352195 31360599
TCONS_00024056 True 553 mRNA 0.51 5 31355516 31360956

Neighbor

gene id symbol gene type direction distance location
XLOC_012206 bahd1 coding downstream 2160 31276437 ~ 31344400 (-)
XLOC_012205 pcmtl coding downstream 124786 31214167 ~ 31221774 (-)
XLOC_012204 rpusd2 coding downstream 134140 31205064 ~ 31212420 (-)
XLOC_012203 BX571712.2 coding downstream 161317 31181950 ~ 31185243 (-)
XLOC_012202 pkdccb coding downstream 182341 31151215 ~ 31164219 (-)
XLOC_012208 BX539317.1 coding upstream 23478 31384434 ~ 31384548 (-)
XLOC_012209 ltk coding upstream 39628 31400584 ~ 31483469 (-)
XLOC_012210 rpap1 coding upstream 174808 31535764 ~ 31579733 (-)
XLOC_012211 si:dkey-170l10.1 coding upstream 245679 31606635 ~ 31611692 (-)
XLOC_012212 znf839 coding upstream 262400 31623356 ~ 31639845 (-)
XLOC_012201 BX571712.1 non-coding downstream 249019 31096326 ~ 31097541 (-)
XLOC_012193 NA non-coding downstream 753502 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 936801 30398949 ~ 30409759 (-)
XLOC_012189 NA non-coding downstream 977035 30306215 ~ 30369525 (-)
XLOC_012218 NA non-coding upstream 766941 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 885173 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 1772863 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1784638 33145594 ~ 33162478 (-)

Expression


Co-expression Network