Fish Transcriptome and Expression Database

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model fish

XLOC_012208 (BX539317.1)

Basic Information

Item	Value
gene id	XLOC_012208
gene name	BX539317.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	31384434 ~ 31384548 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024057
tccagcagctagctctctgcaactctcacatggtagCGCACTGAAGCCTAGCAGGGCTgaacccggtcagtacctggatgggagatgatatgggaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114149

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00024057	True	115	rRNA	0.56	1	31384434	31384548

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012207	ivd	coding	downstream	23478	31346560 ~ 31360956 (-)
XLOC_012206	bahd1	coding	downstream	40034	31276437 ~ 31344400 (-)
XLOC_012205	pcmtl	coding	downstream	162660	31214167 ~ 31221774 (-)
XLOC_012204	rpusd2	coding	downstream	172014	31205064 ~ 31212420 (-)
XLOC_012203	BX571712.2	coding	downstream	199191	31181950 ~ 31185243 (-)
XLOC_012209	ltk	coding	upstream	16036	31400584 ~ 31483469 (-)
XLOC_012210	rpap1	coding	upstream	151216	31535764 ~ 31579733 (-)
XLOC_012211	si:dkey-170l10.1	coding	upstream	222087	31606635 ~ 31611692 (-)
XLOC_012212	znf839	coding	upstream	238808	31623356 ~ 31639845 (-)
XLOC_012213	vsx2	coding	upstream	268092	31652640 ~ 31659670 (-)
XLOC_012201	BX571712.1	non-coding	downstream	286893	31096326 ~ 31097541 (-)
XLOC_012193	NA	non-coding	downstream	791376	30573572 ~ 30593058 (-)
XLOC_012190	NA	non-coding	downstream	974675	30398949 ~ 30409759 (-)
XLOC_012189	NA	non-coding	downstream	1014909	30306215 ~ 30369525 (-)
XLOC_012218	NA	non-coding	upstream	743349	32127897 ~ 32136128 (-)
XLOC_012219	CR407546.1	non-coding	upstream	861581	32246129 ~ 32246255 (-)
XLOC_012228	NA	non-coding	upstream	1749271	33133819 ~ 33138376 (-)
XLOC_012229	NA	non-coding	upstream	1761046	33145594 ~ 33162478 (-)
XLOC_012230	AL590149.1	non-coding	upstream	1822232	33206780 ~ 33231714 (-)

Expression

Co-expression Network