XLOC_012210 (rpap1)


Basic Information

Item Value
gene id XLOC_012210
gene name rpap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31535764 ~ 31579733 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024060
tttattttgcAAGGGTTACTCATAACCCGGAAATGGTGTCACGTTTGTAAACTCTACATGTGTTTAGTGTACAAATGCAGCTCATGGAGGACCGTGACATAAAGCTCGAGAGCGGGATGCTGCGGCGCCCCAAGCCCGCAGACAGTGAGGCGGATCTGCTCCGGGAGCAGCGGGAGCTTCTAGCAGCAGGCGGTCAAACCACGGTCAGTGTGGTGAAGAGACCCGATAAACGCAGAGGAGACGCTGCTGCAGCAGCACCTTTGTCCCAGCAGGGAAACCTCAGAGATGTTGTGACCATTGAAGATCTTCCAGATGAGATTCCCAGCCTGACCCCTGCACCTTCGAAGAAGTCACGGTTTAAACAGGAGCGGGTGCGTTTTGAGGATGAGGATCCCGAAGAGCGTTTGGACAGACATGACACTCATGTCAGTGCTGTTCTTTCCAGGATCGTTGAAAGAGACACAAGTGCAGTACCAGTGTCGCTCCCTTGTATCACAGGCATTGCTTTCCCTAAAGTCTTACATCGATCTGCAATAGAAAATGAAAGCCAGGAAAGAGTTCCCAAACCAACAAAAAGTATTTTTGCACGTCAGATTGCTGCACAGAGGGCTAAGGAAGATGTAAAGTCTTCATCTAAACATGTGGACTTCTCCTCATCGGAGAGCATGCAGACAGACCAAGCAGAATCAAAATATGTGGGTGAGTGTTATCACATTCCAGAAAGAGTTTCAGTACAAAATTATAATGcatacataatatgtgtgtgtatatatatatttgtttgtggtTCTTTTACAGACAGTGTTGGTGGTCCCTTACTGCTTTCAGGTAAAGGGCTTGGGATTGCAAATAGCactgtggagatgatgaagattCATGAGGAAAATCAGATGAAGTTGCAGGCGATGTCCCAGAGTCAGATACTGGAGGAACAGAAGAAGGTGCTGGCACAGCTTGACCCTAGATTAGTGGACTTTGTGAGATCGCGGAAAGCACAGAGAACTCCAGGATCTGAGACTTCATCCAGTCCTGTGCAAAGAAAAGACTTCTTGAAGGAACCTTCAGCTAATAGCGCTTCTCCAGAGATAATAGACACAAGAAAAGCAAAGGAGTCTACGATGGAGGAGGATGAGGAATATGGGGATGGTCAGCTTCTAGTTCAATCTCCAATTTCAGaagaGGAGCTGCCCATCAGGCCACAGAAGGAGTGGGTTCACATGGACAAAGTGGAGCCAGAAAAACTGGAATGGACGAGAGACCTTCCTGCACCCAAGAGAAGCAGCACCAAAAAGGCTATGCAAGCACGTTTTGATTTTGCTGGCACTCTCATCCCACCCACCAAAGACTTGCCCACCCATTTAGGCCTGCATCATCATGGAGACGAGCCAGAGCTGGCTGGCTACTCACTGCAAGAGCTGTTCCTCCTCTCTCGCAGTAAGCTGAACCAACAGCGCAATCTGGCCATCAGCACTCTCGCTAATGTCCTGACCAAAGCTCGTGCTGGTGAGTTCATTTTCTCTCTGAAGAGCAGCGTCTTGTCTTCTTTACTGGATGCTGGACTCCTCTTCCTTCTACGTTTCTCTCTGGATGATGGTGTGGAGGCTGTGATGTCAGCAGCAGTGCATGCCTTGCGAGCTCTGCTGGTTTCATCTGAAGATGAAGAGTCCTTGGATAACACCTTCTCATGGCTCCTTGGGATGGCAAACTTTCCTTTGCTGCCCGCTGCTGAGGAggatgaggatgaagatgatgaaggcTTAGATGAAGTAATGAAAGAAACGGCTAAcgagaaagaagaaaagaaaaccgATCATGATGTTGCTAGACAGGATGTTGTCAAGGGTTTTCTGAGAATGCAGGGTCTTCCCCGATTGAGGTACATCCTTGAGGTTGTGCGACCCTCTCCTGGAGTTGTTCTTGATATTCTGGAGGTTCTGATCCGAATCGCTCGCCACTCAACTGCTTCGGCCGTACAGATCTTGGACTGCCCGCGGCTGATGGACACTGTGATTTCGGAGTTTCTCCCCTGTTCCTGGGCTCCTGCTTCCTCACAGGCTCCATCCTCTTTGTATGGGCTGCCTGTTTCCTTGGCGATGAAGCTGCTGCGTGTGTTAGCAAGTGCTGGAAGGCACATCTGTGCAAGAATACTAAACTCTCTAAGAGGCAAGGAACTTTTGTCCCGGTTTGTGGTTGTGGAGCCGTCAGAAATGCTGCTGGAAGAAGGTGAAGCTCTTCGCTGCAGCTTGGAGGCGTTAAGACTGTTCGCAGTGGCTGCCAGTTATGGACAGGCCTGCAATCTGTACACGGATCTGTATCCTGTGCTGGTGAAGAGACTGCAGGCTGGTCAGCAGTGCTGTTCTTCATCTGAGGCAGTGCTGCGTCTGGAGCTGGACCGAATCAGagctctgctgctgctgctcactCAGGTCACTCACACAGCTGGATGCCATGAAGAGCTGCAGAGGGGCCTGCTCAGTTCTCAGGGTACAGAGTGTCCTCCGCCTCCTTCTGTAGTGTGGACTCATGTGACGGGTCTCCAGCCCACTGTCATTAGCTCTCTGAAGGGCTGCGTGAGAGCACTCGACGGCCCGGCTCAAATGTCAAGCGCTTTGATTCTGCTTCCATCATACCTGCTCTATGCGGAGGCGTTTTATTCACAGCTCTGTCTGCAAAGCTCATTCCAGCCGGTGCAGTGTCTTCAGGAATTGGAGTTGCTGACTTCAGATGTGCTTTTACCACTGATATCCCATCAGGCCATGAAAAATTTAATCAGCAGCTTCAGGTCCAACTCTGTAATCTGTAACTCTGGTCTGAGTGGTGGAGGTGGAGAGTTTGTCCCGAGTCTGCCAGGCTTGAGCTCCTCAAGACTGAAGAGCTCCAGCTCAATAGCAGATACCAAATCCCCTCTGCCTCTCCCCACTGCCCTCCTGCACCTGCTGAACACCATCACCTCCATCCACAAAGGCTTGGTTAACAAGTTCAGTCCGCTCATACTCTCTGACTCTGTACTGGGTTACCTGCGCTCTTGTATCGGAGTCATGCCCTCTGTTTCTCAAATGAGCGCCTGGATTTTAAGGCATGAGCACCACCTGCTGTATCTGCTGCTCAGACTGGCACACAAGCTGGTTCCAGTTGACCCAGAAGTGGCCAAACATGCCTCTCTGTTCCACCAAGTGTCTCTGGCTCTGCTGTCATGGCTGCTGCCTGGCTCTGAACACCTGGCTCATGAACTCATGTCTATCATGACCTTTAGCCACAGCCTCCTCCTAGAGGGTGCTTGTGGAGACCCAGAGGTGACATCACTGGCCGAGCTGCAGCTCCAGGACAGGACTTCACCTGCAGTCAGCGCCCTGCTGCGCGACGCTCTTCATCATTTGCCCTCCATCCGCGGTTGTTACCTGTCCCACCTGGCACACATGGAGCCCTCAGTCCACTCTTCCCGCGACCGGTATCTCGGCCAAACGCCATTTATCAAATCTCACCTCCTTCCTGAACTAACCGGGCCGTCGTTGCCTTCAGACTGGCCCTTCTTACCTCTCATTAGTCTTTATGAGAGATCAGGACTGTCTGTCGGACAGCAGGTTGAGTCTCTTCCGCTGGGGTCTGTCCAGTCTGCCACTCACTGCCTTCAATGGCTGCTGCTTCTGGAGAGCTGGAGAGAGCACACACTCGCTGCGGTGCCACCGGTGGCCAGGTTTGCGCGTCTCGCCTGTGTATTTTTGTGCTCCAGCGACCTCTTCTTGGAAAGGCCTGTGCAGGAGTTTACTTGGGCGCTGTTTCGCAGGCTGACGCAGCCAGCCCAGCTTGAAGCACTGGATTTGGGCTCTCCTCCACCGGGATTGGCTTCCTTTCATGATCTGTACTCGGCTCTGTTGGCACAATATGAAGCGGTGTCTTTCGGTGACCCGCTGTTTGGCTGCTTCGTGCTTTTGCCTTTACAGCGGCGCTACAGTGTTACCATGAAGCTGGCCGTGTTTGGTGAACATGTGGGAATGCTGAGGTCGCTGGGAGTTTCTCTACAGCAGCTGCCTATTCCGCTGGAGAAGTTCACGTCCCCCATGGAGGACTCTTTGCCCCTGCTGCGCTTGTATTTTCGAGCTCTAGTAACAGGAGCTTTGAAGAGAAACTGGTGTCCTGTGCTTTATGTGGTGGCTGTTGCTCACCTCAATGCTTTCATCTTCTCTCAGGACGCAGTGACCGAGGAGGTGGATTTGGCACGTCGGAACTTGCTACAAAAGACCTTCTACCTGACAGATGAGGTGTTGAAGAACCACCTGCTCCTTTTCCGGCTGCCCCAGCAGAATTCAGAGCTGGGCTTTAGCACTTATGAACAGCTGCCTTCTATTCGGGCCCACAGGTTGGACAGCATTGTGGGAACTGGTGGAGAaaggtgattaaaaaaaaaaaaactgttttttttaggTGATTCGTAAACTAGTCAAAAATGTTTTTGGCCTATTAGAGTAACTgtagactttaaaataaaacGAGTTTTTCCTTAATATGGTGTGGTTACTGGTGTCTGTTTCCTCTTTGACTTTGAGCC
>TCONS_00024061
CTCATAACCCGGAAATGGTGTCACGTTTGTAAACTCTACATGTGTTTAGTGTACAAATGCAGCTCATGGAGGACCGTGACATAAAGCTCGAGAGCGGGATGCTGCGGCGCCCCAAGCCCGCAGACAGTGAGGCGGATCTGCTCCGGGAGCAGCGGGAGCTTCTAGCAGCAGGCGGTCAAACCACGGTCAGTGTGGTGAAGAGACCCGATAAACGCAGAGGAGACGCTGCTGCAGCAGCACCTTTGTCCCAGCAGGGAAACCTCAGAGATGTTGTGACCATTGAAGATCTTCCAGATGAGATTCCCAGCCTGACCCCTGCACCTTCGAAGAAGTCACGGTTTAAACAGGAGCGGGTGCGTTTTGAGGATGAGGATCCCGAAGAGCGTTTGGACAGACATGACACTCATGTCAGTGCTGTTCTTTCCAGGATCGTTGAAAGAGACACAAGTGCAGTACCAGTGTCGCTCCCTTGTATCACAGGCATTGCTTTCCCTAAAGTCTTACATCGATCTGCAATAGAAAATGAAAGCCAGGAAAGAGTTCCCAAACCAACAAAAAGTATTTTTGCACGTCAGATTGCTGCACAGAGGGCTAAGGAAGATGTAAAGTCTTCATCTAAACATGTGGACTTCTCCTCATCGGAGAGCATGCAGACAGACCAAGCAGAATCAAAATATGTGGACAGTGTTGGTGGTCCCTTACTGCTTTCAGGTAAAGGGCTTGGGATTGCAAATAGCactgtggagatgatgaagattCATGAGGAAAATCAGATGAAGTTGCAGGCGATGTCCCAGAGTCAGATACTGGAGGAACAGAAGAAGGTGCTGGCACAGCTTGACCCTAGATTAGTGGACTTTGTGAGATCGCGGAAAGCACAGAGAACTCCAGGATCTGAGACTTCATCCAGTCCTGTGCAAAGAAAAGACTTCTTGAAGGAACCTTCAGCTAATAGCGCTTCTCCAGAGATAATAGACACAAGAAAAGCAAAGGAGTCTACGATGGAGGAGGATGAGGAATATGGGGATGGTCAGCTTCTAGTTCAATCTCCAATTTCAGaagaGGAGCTGCCCATCAGGCCACAGAAGGAGTGGGTTCACATGGACAAAGTGGAGCCAGAAAAACTGGAATGGACGAGAGACCTTCCTGCACCCAAGAGAAGCAGCACCAAAAAGGCTATGCAAGCACGTTTTGATTTTGCTGGCACTCTCATCCCACCCACCAAAGACTTGCCCACCCATTTAGGCCTGCATCATCATGGAGACGAGCCAGAGCTGGCTGGCTACTCACTGCAAGAGCTGTTCCTCCTCTCTCGCAGTAAGCTGAACCAACAGCGCAATCTGGCCATCAGCACTCTCGCTAATGTCCTGACCAAAGCTCGTGCTGGTGAGTTCATTTTCTCTCTGAAGAGCAGCGTCTTGTCTTCTTTACTGGATGCTGGACTCCTCTTCCTTCTACGTTTCTCTCTGGATGATGGTGTGGAGGCTGTGATGTCAGCAGCAGTGCATGCCTTGCGAGCTCTGCTGGTTTCATCTGAAGATGAAGAGTCCTTGGATAACACCTTCTCATGGCTCCTTGGGATGGCAAACTTTCCTTTGCTGCCCGCTGCTGAGGAggatgaggatgaagatgatgaaggcTTAGATGAAGTAATGAAAGAAACGGCTAAcgagaaagaagaaaagaaaaccgATCATGATGTTGCTAGACAGGATGTTGTCAAGGGTTTTCTGAGAATGCAGGGTCTTCCCCGATTGAGGTACATCCTTGAGGTTGTGCGACCCTCTCCTGGAGTTGTTCTTGATATTCTGGAGGTTCTGATCCGAATCGCTCGCCACTCAACTGCTTCGGCCGTACAGATCTTGGACTGCCCGCGGCTGATGGACACTGTGATTTCGGAGTTTCTCCCCTGTTCCTGGGCTCCTGCTTCCTCACAGGCTCCATCCTCTTTGTATGGGCTGCCTGTTTCCTTGGCGATGAAGCTGCTGCGTGTGTTAGCAAGTGCTGGAAGGCACATCTGTGCAAGAATACTAAACTCTCTAAGAGGCAAGGAACTTTTGTCCCGGTTTGTGGTTGTGGAGCCGTCAGAAATGCTGCTGGAAGAAGGTGAAGCTCTTCGCTGCAGCTTGGAGGCGTTAAGACTGTTCGCAGTGGCTGCCAGTTATGGACAGGCCTGCAATCTGTACACGGATCTGTATCCTGTGCTGGTGAAGAGACTGCAGGCTGGTCAGCAGTGCTGTTCTTCATCTGAGGCAGTGCTGCGTCTGGAGCTGGACCGAATCAGagctctgctgctgctgctcactCAGGTCACTCACACAGCTGGATGCCATGAAGAGCTGCAGAGGGGCCTGCTCAGTTCTCAGGGTACAGAGTGTCCTCCGCCTCCTTCTGTAGTGTGGACTCATGTGACGGGTCTCCAGCCCACTGTCATTAGCTCTCTGAAGGGCTGCGTGAGAGCACTCGACGGCCCGGCTCAAATGTCAAGCGCTTTGATTCTGCTTCCATCATACCTGCTCTATGCGGAGGCGTTTTATTCACAGCTCTGTCTGCAAAGCTCATTCCAGCCGGTGCAGTGTCTTCAGGAATTGGAGTTGCTGACTTCAGATGTGCTTTTACCACTGATATCCCATCAGGCCATGAAAAATTTAATCAGCAGCTTCAGGTCCAACTCTGTAATCTGTAACTCTGGTCTGAGTGGTGGAGGTGGAGAGTTTGTCCCGAGTCTGCCAGGCTTGAGCTCCTCAAGACTGAAGAGCTCCAGCTCAATAGCAGATACCAAATCCCCTCTGCCTCTCCCCACTGCCCTCCTGCACCTGCTGAACACCATCACCTCCATCCACAAAGGCTTGGTTAACAAGTTCAGTCCGCTCATACTCTCTGACTCTGTACTGGGTTACCTGCGCTCTTGTATCGGAGTCATGCCCTCTGTTTCTCAAATGAGCGCCTGGATTTTAAGGCATGAGCACCACCTGCTGTATCTGCTGCTCAGACTGGCACACAAGCTGGTTCCAGTTGACCCAGAAGTGGCCAAACATGCCTCTCTGTTCCACCAAGTGTCTCTGGCTCTGCTGTCATGGCTGCTGCCTGGCTCTGAACACCTGGCTCATGAACTCATGTCTATCATGACCTTTAGCCACAGCCTCCTCCTAGAGGGTGCTTGTGGAGACCCAGAGGTGACATCACTGGCCGAGCTGCAGCTCCAGGACAGGACTTCACCTGCAGTCAGCGCCCTGCTGCGCGACGCTCTTCATCATTTGCCCTCCATCCGCGGTTGTTACCTGTCCCACCTGGCACACATGGAGCCCTCAGTCCACTCTTCCCGCGACCGGTATCTCGGCCAAACGCCATTTATCAAATCTCACCTCCTTCCTGAACTAACCGGGCCGTCGTTGCCTTCAGACTGGCCCTTCTTACCTCTCATTAGTCTTTATGAGAGATCAGGACTGTCTGTCGGACAGCAGGTTGAGTCTCTTCCGCTGGGGTCTGTCCAGTCTGCCACTCACTGCCTTCAATGGCTGCTGCTTCTGGAGAGCTGGAGAGAGCACACACTCGCTGCGGTGCCACCGGTGGCCAGGTTTGCGCGTCTCGCCTGTGTATTTTTGTGCTCCAGCGACCTCTTCTTGGAAAGGCCTGTGCAGGAGTTTACTTGGGCGCTGTTTCGCAGGCTGACGCAGCCAGCCCAGCTTGAAGCACTGGATTTGGGCTCTCCTCCACCGGGATTGGCTTCCTTTCATGATCTGTACTCGGCTCTGTTGGCACAATATGAAGCGGTGTCTTTCGGTGACCCGCTGTTTGGCTGCTTCGTGCTTTTGCCTTTACAGCGGCGCTACAGTGTTACCATGAAGCTGGCCGTGTTTGGTGAACATGTGGGAATGCTGAGGTCGCTGGGAGTTTCTCTACAGCAGCTGCCTATTCCGCTGGAGAAGTTCACGTCCCCCATGGAGGACTCTTTGCCCCTGCTGCGCTTGTATTTTCGAGCTCTAGTAACAGGAGCTTTGAAGAGAAACTGGTGTCCTGTGCTTTATGTGGTGGCTGTTGCTCACCTCAATGCTTTCATCTTCTCTCAGGACGCAGTGACCGAGGAGGTGGATTTGGCACGTCGGAACTTGCTACAAAAGACCTTCTACCTGACAGATGAGGTGTTGAAGAACCACCTGCTCCTTTTCCGGCTGCCCCAGCAGAATTCAGAGCTGGGCTTTAGCACTTATGAACAGCTGCCTTCTATTCGGGCCCACAGGTTGGACAGCATTGTGGGAACTGGTGGAGAaaggtgattaaaaaaaaaaaaactgttttttttaggTGATTCGTAAACTAGTCAAAAATGTTTTTGGCCTATTAGAGTAACTgtagactttaaaataaaacGAGTTTTTCCTTAATA

Function

symbol description
rpap1 Predicted to be involved in transcription by RNA polymerase II. Orthologous to human RPAP1 (RNA polymerase II associated protein 1).

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-090914-1 Predicted to be involved in transcription by RNA polymerase II. Orthologous to human RPAP1 (RNA polymerase II associated protein 1).

Ensembl:

ensembl_id ENSDARG00000075072

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024060 False 4546 mRNA 0.51 24 31535764 31579733
TCONS_00024061 True 4387 mRNA 0.51 25 31535806 31579715

Neighbor

gene id symbol gene type direction distance location
XLOC_012209 ltk coding downstream 52295 31400584 ~ 31483469 (-)
XLOC_012208 BX539317.1 coding downstream 151216 31384434 ~ 31384548 (-)
XLOC_012207 ivd coding downstream 174808 31346560 ~ 31360956 (-)
XLOC_012206 bahd1 coding downstream 191364 31276437 ~ 31344400 (-)
XLOC_012205 pcmtl coding downstream 313990 31214167 ~ 31221774 (-)
XLOC_012211 si:dkey-170l10.1 coding upstream 26902 31606635 ~ 31611692 (-)
XLOC_012212 znf839 coding upstream 43623 31623356 ~ 31639845 (-)
XLOC_012213 vsx2 coding upstream 72907 31652640 ~ 31659670 (-)
XLOC_012214 lin52 coding upstream 87892 31667625 ~ 31695257 (-)
XLOC_012215 pomt2 coding upstream 116924 31696657 ~ 31712041 (-)
XLOC_012203 BX571712.2 non-coding downstream 350521 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 438223 31096326 ~ 31097541 (-)
XLOC_012193 NA non-coding downstream 942706 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 1126005 30398949 ~ 30409759 (-)
XLOC_012218 NA non-coding upstream 548164 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 666396 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 1554086 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1565861 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 1627047 33206780 ~ 33231714 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03455342_03475831 RPAP1 coding CI01000189 null 3455231 ~ 3475831 (-)