XLOC_012212 (znf839)


Basic Information

Item Value
gene id XLOC_012212
gene name znf839
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31623356 ~ 31639845 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024064
GGGAACACCAATTGCATGGCCACCGTTACATTTTTGAGCGTCTCTGGATTATaacagttttgcacatttgaaatgttttggACCGGCCTTTGACTCAATCCCTCATACGCTGctcatattttcaatatttatttctgCAAGCAAACGGCTCCCTTTCGCCCTGCCGTGAGGATTCCTACGTCAGCTAGCAAGTTTTGCTCCTGTAAACAAAATGGCGGACAATGAAGACGATAATAATTCCGCGTCCAAATCTGCAGCGGCGAAAATGGGCAATTCCGGCGCGAGCGGATCTTTACCGCAACCTGAAACAACACAACCCGCGACCGAAAGGGGAAATATACAAGAGGACGCCAGCAAAACGCCGTCCGCCGCGGAAGGGGGCGTTGATCAAGGCCTGGTCGAGCTGATGCACACCGAGTCTGCAGTGGATGTCCGAGTTGTGGAGGGGAACGTTACTCAGGAGGTGATCGGGCAGATCGTAAGCGGTGAGGTGATTACCGACCCGAGCATTATCACGTCTTATGTTCAGGCCACCGCAGAGGCCGGTGTGACCGCTGAATGCGCCACTGTCAGCGGGGAAGTCTTAAACGCGCTCGCACCTACGACCACCATCATTTACGTGCAGCCTGACGGAAGCTTCGTGGAAAGTTCAGGATTATCTGCAGAGGAGCAGCAGCAGTTAATCGAGCAACTGTCCAAACAGCAGTTGGTCCATGTTGCGGGGACTGACAGCGCTGCCAAAACCTCCACCGCCCCGATCGTGGACGTGCAGCAGGTTATAGTGAGTAAAGCACAGATGATCGCCCATGCCGAGCCGGTTGTGACCCATTCGCCCACCCCGAAGATCCTGCAGAGAGCTGCCGTCCCGGCGCAGCCCACCTCCTACATTGCGCTGGACTCCAGTAATTTACAGCTGGCGGCGACGATTCAGTCGCAACCGGTCGGGATCGTGCAGAACGCGTCGCAGCAGCTGCAGAGCGTCGCCAAACAGGTCGCGCTGCAGCAGTCGCATAACGGAGCCCACACGACAACCCAGAAGGCACCCGAGCCCATCCAAATTCAAGTGCAGGCACCTCTGAAGCAAGACAATAAACAACGGCAGACAACTCCAATAACAATTTTACAGCCACAGAATCTGTCAACCAGTCAGCCACTGGTGAAGGTTTCAACCGTAGGAACGTTAAGCAGCCCGCAAATCATCCACATCACGCCGGTGCCTGGCCAGCAGCAATATTTCTTACAAAACCCAAGCGATCCCCCTATTCAGCTTCTACTTCAGAAACCAGCTCCTGTCGTTAGCACCATTTCTGTCCCCATTAGTAAGGTACATGTCTCACCACCACCGGCCACAGTCAAAAGTCCACCAGCAAAACCCCAAGTTGTTCCTACCCCAAAGATCCTCGTTCCATCACAGAAAGTTttgtctcctcctcctcctccagccaAGATAACAATGCCCACCAAAGTCGTTACCGTAGAAACAAAAACTTCAACTCCGCCTGTTGCAGAGAATGTCCAGAAAGTTAAGAATCGCCAGAAGAAGCCTCTAAAAATCCAGACACGCTCTGGTCGGGTGTCCAGACCACCGAAGCACAAGGTGAAGGATTATAAGTTTATTAAAAATGAGGACTTAGCTGAGAGCCACCAGTCGGATTCAGACGACTACTCTGAGATAAGTGTGGAGGATGAGGAGGGAGAAGACCGCAAGAGGAAGACCTCGGATGTTACACTCAACCTCCGTGacaaagcctttaaatgtgataCCTGTGAGAAATCGTACATTGGAGTTGCTGGTTTGAGCAGACACTATAAGCTATATCCCACACATGACAAGAACCCAACACCGGTTCAAGCTGAAGACCTTTCTAAAACTAGAGATGAACAACCTTCAGAAACTGAAGAAACAGATATTATTCATGTAAAAACAGTCAGTACTCAAAAGGTTCAAGAATTTGGAAAGGTAGAACCCAGGAGACCAGGGCGGCCCAGGGGACCCGGACGGCCGGGTCATCCTAGGAGGCCTGGACGGCCACCTAAAAGAGGACGACCTGGACGGCCACCCAAGTTCCCCAGAGGAATGACCTTGGAGCAACAAGCACAAAGACAGAGAAACAGACTAAAAGAATTTATTAAGCAGTATGATGATGAAGATCTCATGGAGATTGTTCTTCCGCGTCTGGCCCGGGTCATGACTGTCTGGGAGTTTGTGATGATGAAGGTGGAGAAGGGCTACCCGTCAAAGCAACAGTTCCCAAATGTGTACCATGAGTTTGAGGAACTTCACAGTCAGGTGAAGAATATGGCGCTGGAATATTTGCACACTTCACCCGCCTCTCGGCCAGCTATAGAGGTCAACAACATAGGAGTTTTACAGTCTCTGGGTATAACAGATCCCAACGCACTGAAACTCCTGACTTCTTCTGAAGGACAACAAAGTCAAAAGACAAATCAATTAGAGCCACGAGCAAATCAGGCCACCAAGAGTCTACGGAGTATTGAGAATGCCAAAATGCTGCCTCCTGCAAAAAGGTTTAAAATAGAAAACCCTTCTGAAGAAACCAACGGCTATCAGATCAATCAGAACGGCATCCAGAAGGACGAGCCTGTTGACGACTCAGTACTGCTAAGGCCTCAGGTGGTGTTGACCAGACTGGAGAACCTGACGTCTGTAGATCTGACTGCTGCAGATGAAGCACAGAGCGCTGAAAACACTACTCCAACAAGGACAGAAGAAGAGCCTATGGAGACAGAAGTGCCTTCTGCCGATTCGGATACTACAAAACCCACTGAAGATCCAGAGATCTCGAAGGTTTTGAATAGCAGCACAACCGTCGATATCGCCGATCAGGTGAAAGAGCTGGAGCAGGCTCTGAGCACAGACACTGAGCATAAAAACTCAACTCAAGAACCAACACAGCAAGCGCTTGAAGATGGCCAGGCAGAAGCCGTAGAAGATCCTGAGGCCGGTCAGGTGGTGCAGCAGGAATCTCCAGTCATCATCCAGACAGCCGAGGGGCTCGTCATGCAGAGCGCAGAGGAGCTGGCCGCTAAAGGCATCGTCATAGTCAACGGTCCCGATGGCACCATGATGCACATCGAGGCGCCCGAAGGAGTTCCTTTAGAGACGGTTCACGCTCTACTGGGCATTGAAACTGAGAGAAAGACTTAGCCACACCTTCACTTCCTGTTTTTGTCCATTATTGACACCATGTATACGTTCTGTCTGTgttatggtgtttttttttcaatgaactTTTATTGCATTCTTTGTAAATTTGTATAAAAacagtattattatatattagtgttttctgtttatgcaAAAGTCTTTGTTGATTTCAGATTTTAGACTGTGTTCGCTTATGTTGGCATATCTTAACTATTGGTTTCAGAGTCCATGACTGGGTGTTGATGGAAAGTGATATTTACTTATTTGACAACACACTAAACTGTGGAAGAAACCGagcactttttttattttcaaagttGAATGTTTCATGACATGTGGAAATGGGAGGAAGAAAAATCTGCCAAAACTAAGTTACGGACTCAACGAGGTTCAGTTAAGCTGTGGTGCGATTTTTGTGAAACTCTGTCAACTTAGTTGACCTTCAGTGAAATCTGTAAATAGCTGTTCCTTTATGTTAAAGCCCCAGGCTATAGTCATAATACAGTTTAAATCAGTACCCCCGCCATGATATACTTTATTCAAACACATTTGGACACTTGTTTGAATATTACCCCTCAGCCTAAAGCTGAATGCGGTCAATCTGGCtcaaaaaacaagatattttgagaTTTCTTATATATAGTTGAGCTTTTGATAAGCCACTTCAGATGGTGAGAAAAACAATCTAGATTTGTAAAACAAACAGGGATGTTTGTAATCTCCGAGCGCAGCCTCAGATGTTCCATTGTTTCTGTTATCCAGTAGTTTTGTTTGTCTAGTGCAAGATTTATTTGGAAAGTTGATGcactattttattactttttatataaTTCCTGATttactgtgtttttgaaacatctcaacatttttaatacaaaGGGACGTGTTCAAATATGA

Function

symbol description
znf839 Predicted to enable metal ion binding activity. Orthologous to human ZNF839 (zinc finger protein 839).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4936 Predicted to enable metal ion binding activity. Orthologous to human ZNF839 (zinc finger protein 839).

Ensembl:

ensembl_id ENSDARG00000076988

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024064 True 4066 mRNA 0.47 7 31623356 31639845

Neighbor

gene id symbol gene type direction distance location
XLOC_012211 si:dkey-170l10.1 coding downstream 11664 31606635 ~ 31611692 (-)
XLOC_012210 rpap1 coding downstream 43623 31535764 ~ 31579733 (-)
XLOC_012209 ltk coding downstream 139887 31400584 ~ 31483469 (-)
XLOC_012208 BX539317.1 coding downstream 238808 31384434 ~ 31384548 (-)
XLOC_012207 ivd coding downstream 262400 31346560 ~ 31360956 (-)
XLOC_012213 vsx2 coding upstream 12795 31652640 ~ 31659670 (-)
XLOC_012214 lin52 coding upstream 27780 31667625 ~ 31695257 (-)
XLOC_012215 pomt2 coding upstream 56812 31696657 ~ 31712041 (-)
XLOC_012216 dtd2 coding upstream 77347 31717192 ~ 31719071 (-)
XLOC_012217 abraxas2 coding upstream 165930 31805775 ~ 31819837 (-)
XLOC_012203 BX571712.2 non-coding downstream 438113 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 525815 31096326 ~ 31097541 (-)
XLOC_012193 NA non-coding downstream 1030298 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 1213597 30398949 ~ 30409759 (-)
XLOC_012218 NA non-coding upstream 488052 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 606284 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 1493974 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1505749 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 1566935 33206780 ~ 33231714 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03506782_03513494 ZNF839 coding CI01000189 null 3506782 ~ 3513494 (-)
bowfin (Amia calva) AMCG00000646 NA coding CM030141.1 CM030141.1 20839205 ~ 20844566 (-)