XLOC_012217 (abraxas2)


Basic Information

Item Value
gene id XLOC_012217
gene name abraxas2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31805775 ~ 31819837 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024072
GGATTGTGGGATCGGCGCGTATGTTTCCATCATGGCGGCGTCAATTTCGGGATATACTTTTAGTTCTGTGTGTTATCACAGCGCCAACAGCAATTCTGACCATGAGGGCTTCCTGCTGGGAGAAGTGAGGCAAGAGGAGACTTTAAACATCAGTGACTCGCACATCGGTAGCTCAGAATTCCTCAGTGTAATAGaGGTCCATAATCATGAACCTTGTGCACAACTGTTTAGCTTTTATGACTATGCAGGTAACATCAATGAAGAAAATCTCGATAGAATCCTCAAGGACAGAAGAAAAAATGTTATCGGCTGGTACCGGTTTAGAAGGAACACCCAACAGCAGATGTCCTTCAGGGAGCAGGTGATCCATAAGCAGCTGACCAATATCCTCGGCATCCCAGATCTAGTCTTCCTCCTCTTCAGCTTCATCTCCACAGCCAATAGTTCCACACATGCTTTGGAGTATGTGCTCTTTAGGCCCAACAGAAAATATAATCAACGGATATCTCTAAGCATCCCAAACCTGGGCAACACCAGTCAGCAGGAATATAAAGTGTCATCTGTGCCGAACACCTCCAAGAACTACGCCAGTGTTATTAAAGAGCATGGaACTGAGTTCTTTGATAAGGATGGAGTGATGAAGGACATCCGGGCTATATTTCAGGTGTATAGTGCCCTTCAAGAAAGAGTGCAGGCAGTGTGTGGTGAAGTTGATCAAAGTGAAAGAGTGAGGGAGAAAATCCAAGAAGAAGTGAACAAACTCAAAGAGGAAATTGCTCTTAGGAAACGTAACAGCGCTGAAGAAGAAAGAAGGATCCAAGAGGCAGCTGCTGAGACGCATCCCGATAGCTCTACCCTTCCCGAATCCTCACACTCGTCTCTGACTGGAGTCGTGCTCTCAGGTCCCACAGCGGAGCCCAGTTTAGAGAGACCTGTGAACTCGTCATCTCCACCCATCTACAGCACCGCACTGCCTCCAGATTCACCAAGCGCTATCCTGCTGCCACGGCCACAAGCCGTAGGGTCACCCGGCCACCCTTCCCCCAGTCTGGGTTTGGGCAACGGAGACGGCTCAAGCTCGGATTCCCTAAACCGCCAGGCCACCGGCCAGGAAGACCACGAGGAAGACGACGATGACGACGAAGATGAGGACAGTAGCGAGTATGAAAATTTAGTTAGCGAGCAATTGCAACCGACTTCTTTACCAGATGCTGTTGCATTAGGAAGACCGGCTACCCTGTGGCCTGACGGAGATGCCCACAGCCCACCGGGCTCCTAGTGATCGAACAAACCAATGAGGATACTGACGAACAGACAGAACTAGGTGTGATGATCATAAGGCTGAACACAAACAAGCACTTGCCTTTTGTGAGTTATGACAATGTTGTCCTGTTGTACACATTTTACAGCTCTGTGCAGGCGATGTCATCGCGTTGGGACGGACTCTGAATTGGCGATGCAGTGATATCCCCAATCATGTAGACCGATGGACCCCGCTTTCTCCTTTTCATGCTCTCCTCCCTGGCTTCGTTGGGGTGGAGAGGTGCATCCTGCTTTTTTCGGCATCTGCTACTCACTGGAGTCATTCGGTTCTCGCACCATTTACCTCTTGCACTGTTTTGCCTTCTTTTGATCTGCATTTGAATAGAAAAGCAAAGGGAATGATGTCTTTTTATTTTGCGGCCTTCAAACACTTCTCTGTGTGAGCTTACTCCATTGTCTGGCTTCATATATCTGAATGGACAAGAACCTTTTTTGCGATTATAATAAGTGCTTGGGACTGCACATGGCTGACACTTGAAGAGTTCTTGTtctagaaaatgtattttatttttggttttatcAGTTTGATTTGAGTAATATAATGGCCTATTCATAAAACAATTGGGTCATTTAATTGGTCAATGATTATATAAGTTACTTTAATAAGGGGtgcttgtatttttttatgaCGTACTGTAGATCACTACTTTCAATGGCTTAAATCAACcacgtttgttttattttgctcttTTTGATTGAACCGATGATTCTAATATTTTCTGCTGCACTTCAGACTTCACCATTGAGCTTTAACTGAATTTACAGATTTTGTGGTTTGGATCATAAACTGTAAATGTCAAGGGT

Function

symbol description
abraxas2 Predicted to enable microtubule binding activity and polyubiquitin modification-dependent protein binding activity. Predicted to be involved in attachment of spindle microtubules to kinetochore; mitotic spindle assembly; and protein K63-linked deubiquitination. Predicted to be active in nucleus. Orthologous to human ABRAXAS2 (abraxas 2, BRISC complex subunit).

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process
GO:0005634 nucleus cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2491 Predicted to enable microtubule binding activity and polyubiquitin modification-dependent protein binding activity. Predicted to be involved in attachment of spindle microtubules to kinetochore; mitotic spindle assembly; and protein K63-linked deubiquitination. Predicted to be active in nucleus. Orthologous to human ABRAXAS2 (abraxas 2, BRISC complex subunit).

Ensembl:

ensembl_id ENSDARG00000098907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024072 True 2127 mRNA 0.46 9 31805775 31819837

Neighbor

gene id symbol gene type direction distance location
XLOC_012216 dtd2 coding downstream 86704 31717192 ~ 31719071 (-)
XLOC_012215 pomt2 coding downstream 93734 31696657 ~ 31712041 (-)
XLOC_012214 lin52 coding downstream 110518 31667625 ~ 31695257 (-)
XLOC_012213 vsx2 coding downstream 146105 31652640 ~ 31659670 (-)
XLOC_012212 znf839 coding downstream 165930 31623356 ~ 31639845 (-)
XLOC_012218 NA coding upstream 308060 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 coding upstream 426292 32246129 ~ 32246255 (-)
XLOC_012220 klf11b coding upstream 546104 32365941 ~ 32370047 (-)
XLOC_012221 grhl1 coding upstream 571219 32391056 ~ 32426413 (-)
XLOC_012222 xkr5b coding upstream 788173 32608010 ~ 32621103 (-)
XLOC_012208 BX539317.1 non-coding downstream 421227 31384434 ~ 31384548 (-)
XLOC_012203 BX571712.2 non-coding downstream 620532 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 708234 31096326 ~ 31097541 (-)
XLOC_012193 NA non-coding downstream 1212717 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 1396016 30398949 ~ 30409759 (-)
XLOC_012228 NA non-coding upstream 1313982 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1325757 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 1386943 33206780 ~ 33231714 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03608917_03613975 FAM175B coding CI01000189 null 3608235 ~ 3613975 (-)