Fish Transcriptome and Expression Database

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model fish

XLOC_012219 (CR407546.1)

Basic Information

Item	Value
gene id	XLOC_012219
gene name	CR407546.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	32246129 ~ 32246255 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024073
TTGCATAACTaaagctggcagctagctctctgcaactctcacatggtcacccactgaagctaagcagcgctgcgcctggtcagtacctggatgggagaccacatgggaaagcttttTGTTgtccaga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085514

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00024073	True	127	rRNA	0.52	1	32246129	32246255

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012218	NA	coding	downstream	110001	32127897 ~ 32136128 (-)
XLOC_012217	abraxas2	coding	downstream	426292	31805775 ~ 31819837 (-)
XLOC_012216	dtd2	coding	downstream	527058	31717192 ~ 31719071 (-)
XLOC_012215	pomt2	coding	downstream	534088	31696657 ~ 31712041 (-)
XLOC_012214	lin52	coding	downstream	550872	31667625 ~ 31695257 (-)
XLOC_012220	klf11b	coding	upstream	119686	32365941 ~ 32370047 (-)
XLOC_012221	grhl1	coding	upstream	144801	32391056 ~ 32426413 (-)
XLOC_012222	xkr5b	coding	upstream	361755	32608010 ~ 32621103 (-)
XLOC_012223	cgref1	coding	upstream	384534	32630789 ~ 32636533 (-)
XLOC_012224	kcnk2a	coding	upstream	410947	32657202 ~ 32698517 (-)
XLOC_012208	BX539317.1	non-coding	downstream	861581	31384434 ~ 31384548 (-)
XLOC_012203	BX571712.2	non-coding	downstream	1060886	31181950 ~ 31185243 (-)
XLOC_012201	BX571712.1	non-coding	downstream	1148588	31096326 ~ 31097541 (-)
XLOC_012193	NA	non-coding	downstream	1653071	30573572 ~ 30593058 (-)
XLOC_012228	NA	non-coding	upstream	887564	33133819 ~ 33138376 (-)
XLOC_012229	NA	non-coding	upstream	899339	33145594 ~ 33162478 (-)
XLOC_012230	AL590149.1	non-coding	upstream	960525	33206780 ~ 33231714 (-)
XLOC_012233	CR628327.1	non-coding	upstream	1172007	33418262 ~ 33460893 (-)
XLOC_012235	NA	non-coding	upstream	1318627	33564882 ~ 33571806 (-)

Expression

Co-expression Network