XLOC_012222 (xkr5b)


Basic Information

Item Value
gene id XLOC_012222
gene name xkr5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32608010 ~ 32621103 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024083
GTCACATATTGAGCGGCAGCCTCCAAAAACTGTTCACACAAAGCACGCTTAGCACAGAAGCTCGCTGTCCTCTCACAGGCGAACAAATACcacaaaaaagtttaaaaaacggCAGAATTGTACAACGATGCAGAATCGAAAGGGAAGTGAAATCACATGGAGTCACGTATGTCTCTACTCATTTTCAGGACTCATTGTTTTATTGGAAAAAGCAGCACTGGTGCTGTGCTTCACACACTACCTCATTACGGGTCAGGAGCTGCTGGCGTGGCTGACTGCGGCTCTGTGTTTGCCCATCTCTGCTGTTCAGATGCTCAGTCTGAAGTGGTACATCACTGATGAAGAAAGACCCAAGCCTTCAGTCATCCTGCTGCACTGTCTGCATCTGGGCGTCTACCACAGaTTGTGGAGCTGCATGAAGTCCCAGGCTGAGCAGGTTCAGTTTGGTGCAGTACTGATACAGCAAGCAGATGTTTCTGTTCTCTGTTTGATTGAAGCCCTGACTCTCAGTCTACCTCAGAGTTTACTGCAGACCTACAGTTTATTCACCCTTCACCCTGGCCTTCTGTCACCAGTGGTTGTATGCATCGGGCTGAGTTTGCTGAATGTGTCGTGGTTTGTGGTCCTGTACAGCCGCTCATGTTTTCTGCTGCGTCCCGCTCATCTGCACATGACCCCTGCCGCACTGCTGTGCCAGTTCATATGGAGAGCAGGCATGCTGAGTGCCAGAGTGACCAGCCTCATGCTGTTCTGCAGCACCTTTCACTGGTGGACTTGTGGAGTCCTGGGTTTCCACTGGCTCATTATGATGTTCTGGCAAGTGTCCCAGCAGACAGACATCTGCATCAACCGTGGCTCCTGGCGTCTCTTCAACTTCATCTTAGGGGCTTTGTACattttcatctttgttaatgttaaagaCGGTCCATCGCGGTACCGCATGACTGGATTCTATCTGTTAATGCTGCTGGAGAACACTTTTCTTCTGCTCCTGGCATCAGACTCTTTCAGCGGGCCTTCATGGGACAGCATGAGTGTTCCTCTGACTGTCTCATGCAGCTTCCTAATCGGTGTCATTTTTCTCATTCTTTACTACCGATTTCTCCATCCGAAATCCACTGAGATCCTCCAAAGCCTGAGACTCCAAATGAGCCTGACAACCATCGACAAAACCGACACAGACTGCAAAGACACAACGCTGGAATCCTCCACGCACAAACACGGCACCTTCTCACTGACCGGGTTTCCTCCTGCTCAGCATCTTCATCCTCTAGAGGGCGACGGGCACCATCATCACATGCTAATAAAGCTAGCTCTCAAAACTGGAAACCATGACAAAATCAACAGCATGTATGGAAACAGAGGGCTTTCAGTCATACTGGGCAAAAATGATGCCAAGGATGAAGATTTGGGAGAAAGCGGATGTAAACGTTCATCAGTTGAAGCAGGTAAAGCGTCTGAAAACTACCAGATTGAAAGCACCTCTGCAGCTGAAGTGAAACAGGTGTCTTTAGAGAAAATAGAGTATAATAGTTGCCCCGTGGACTGCAGCAGTACTGTTTACTTCAGTGCAGAAGCTCAGTCTTATAGTGTCAGTGATTCTATATTAGAAAAAGACAAAATGGCCGCCATCAGTCCTATTGTGAATGGAGATGAAGTGCATTTGATTGGCAAACAGCTGTTGAATAGGAATCCGTGTTATACCTCCACTCCGATAGCAGATTTTAAAACAATGCAGACTGTAGGTGATCGACTCGGAGGGGTTAGAAGACAGGTGCAGTTTTGATCGTAACAACTGGAATGAGGACATGGTAAACAAGGTTTTATCTGGGATGAAGATGGTGTTGTTAGCATGTTACAACCACTTTAAGCTGCTACAGTAGTTATTTGTTGTTTGGTAGTTTTAGCTATAAGCTCAGTGAATCAAAAGGGGTTTacgtttagtgtgtgtgtgtgtttacataagCTGATGTATTTTAGTGCCTGATCTTTTTTCTTTATATGATTTTatatgtatgttttatatatattttatgtcatttgcttgttttattaatatatactgtatgttgagGGAAcagactatatttaaaaaaaaattattgttatttatggaTAATCTGTGGATAAAAGCTAATTTTATAGTTCACTttttaaataacatgtaataataaataattaactttttaaacattatttatgtaaacataaatcttatttttttaaggcGAGACACTGCAGGTAAATAAGGGTTTAAAAACATTGGATAAAGTCAAGTTCAAATTCTagcttatttaactttttttgacaCATTAGAATCAAATTTGgtaggaaggtcactggttcaagtcctggctggtcctgttggcatttctgtgaggagtttgtatgttctccccgtgttcacgtgggtttcctccggctgctccggtttacctcataatccaaagacatgtggtaggtgaattggatgaactaaattgaccatagtgtgtgtgtttgtggttgtgtttgtgtgtgtgtgtgtgtgtgcgtgtgcatgaaTGATTGTCTATGAGTATTTCTCAGTaccgggttgtggctggaagggcatctactgcagtTTGGTGCTGAAGTGGAAATTGATGGTACTGTGCAGGAGAATTAATTTGTTTGGGAAAACTGCCTTGAAAAATCTGAATGGCAATTGaaatcttgtttgtttgtttctttttttgtacaTTACACTAAAAAAACACTTCAGAAAAAGCCAAAAAGTCcaaaatctcaaaactgacaTGCATTTTTGCCTGCAGCATCTCACCCTAAATTCTACAAGTCTTCTAAAAAAATTCATATTCAAAATATTTGGATTTCTGAACTTCCTAGTATGCTTTCATTTgtactaataaaatattaacatgctaattcagaaATATTTTCAGCACTCTGAACCCTTATCTGTTgtagttatatttaatttaagaaatgtagctattattttatttcaaagtgtgtatgtttgtataccTGTATATGCGTCTTTGTTTGTATCTAATGTATAATTTTGTCTCTTTTATTTAATCAGCAATATATGTGTAAAGAGAACACACTATAATTTAGAATAATCTTTGTATGTTAAACATGTggagaaaatacaaaatatttaggcatttgttcctgatttttttttcatatgaacAAGTTTACTTAAGATTGTGCTTTTTTACTATTGTTACAACCCACTTTGACTGCATACcccctaatattattatttcattattatatacaaaaaaaattatatttatggtgaaaaatgcattttacagtatattattattacttttctataatattttatcattttgtgTCTGATTATTTCATTAACAATATATGTGTAGGGGGATTTGGAAAATACCTATAATTtagcatcaaaataaataaatggaataaaTAAAAGTGCTGTTTAAGCTTATAATTATTCTACTACGCACTTTCTGGCATTTTTTCCACTATAGTACTGATATAAATCATGGTTTTACAACAATAAATGATGTCATTCATTCCAGTATTTTTATGATAGTagtaaactaaactaattaaattcTAAATGTTattctttctgtctatctattgCATGTGCTGAAAGGGACCGGTTTTAAAATCAAACAATTATAAGGCTGTTTTTATCAGACAAGTAGAGGGAAGAAATGCATTGTAATACGAGTTTGGGCAAAGAAACATTCAGAATGTTAAGGAGTTTAAAATATAgcttgagtttttattttattgaaagatGTAGTGCCTCCACAGACAAACTTAATTTGGCACGTTAGTTCTCCTCAGATGCATTCAAAACAACCATGTTAAAACACAACCAGAATTTCAAATCCTAATACATCCatatatttctatgaaattaacatttttaaaacatttgaatgacTGTAGAATTAGAAACATGtgagtcatttattaaattataaaaatacacattttctcAACACCAAGGAGGGAAAGAGGACAGGGATGTATTTCTGATCCAAAACTGGATGGATTTTATCTATAGCACCATAATTCATACTACCTGTGAAAAATACAATACAGAGGTGATTGTCATCCATGCATAATTAATACTTGATTGAATTGGGCTTAATGCAGGTAAACATGAAAAGTTGGTGTCTGTTGATAATCCTTTTTATAACTttccatttttacagtgtaatttgttgttgttgttttattaaaataaaggcacGCACCA

Function

symbol description
xkr5b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human XKR5 (XK related 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-170829-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human XKR5 (XK related 5).

Ensembl:

ensembl_id ENSDARG00000097530

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024083 True 4243 mRNA 0.38 7 32608010 32621103

Neighbor

gene id symbol gene type direction distance location
XLOC_012221 grhl1 coding downstream 181597 32391056 ~ 32426413 (-)
XLOC_012220 klf11b coding downstream 237963 32365941 ~ 32370047 (-)
XLOC_012219 CR407546.1 coding downstream 361755 32246129 ~ 32246255 (-)
XLOC_012218 NA coding downstream 471882 32127897 ~ 32136128 (-)
XLOC_012217 abraxas2 coding downstream 788173 31805775 ~ 31819837 (-)
XLOC_012223 cgref1 coding upstream 9686 32630789 ~ 32636533 (-)
XLOC_012224 kcnk2a coding upstream 36099 32657202 ~ 32698517 (-)
XLOC_012225 cenpf coding upstream 99310 32720413 ~ 32743249 (-)
XLOC_012226 smyd2a coding upstream 124660 32745763 ~ 32779556 (-)
XLOC_012227 prox1a coding upstream 201485 32822588 ~ 32865788 (-)
XLOC_012208 BX539317.1 non-coding downstream 1223462 31384434 ~ 31384548 (-)
XLOC_012203 BX571712.2 non-coding downstream 1422767 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 1510469 31096326 ~ 31097541 (-)
XLOC_012228 NA non-coding upstream 512716 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 524491 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 585677 33206780 ~ 33231714 (-)
XLOC_012233 CR628327.1 non-coding upstream 797159 33418262 ~ 33460893 (-)
XLOC_012235 NA non-coding upstream 943779 33564882 ~ 33571806 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_04011834_04018478 NA coding CI01000062 null 4011834 ~ 4018478 (+)