XLOC_012229


Basic Information

Item Value
gene id XLOC_012229
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33145594 ~ 33162478 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024938
tttgactgtcttatcgaTTCACagtgacacaaggacttgtcagtCTGACGACACAGACACATTCATTGAcacagaaatttagttttgagagatgaactaaggATTTTAAGCAAGTGGCACTggcttttgcagCCACCTGTAGTTGGAGATGCGGCACCTGGCATCCGACTGCTCCCTGCTGTCCTATTGGCGGACGGTGCGTCTCCTGCCCAATAGAAGAGGCCTCCCCCCGTCTCTGGAGCCGTGCTGGGCCGCAGGGGCAGCGGGGGCTGCTTTTTACCCCAGGAGGGGCTCACTCCTGCTGGTCTGCTGGCTCGCTCGGCTTCTGTCCTGCTGACCGGGTGAAAAGGAGCCACTCGCCGGGGACCTGCTCGCCTCAGATTCCTGCACACATTCAATGGCTCGCACACCTGGAGGTGTGTATTTGTACTCTGTCTGAACTCGATTATTTGTGCGGTATGAGAAGCAATTGGCATTTTTGAGAGAGGAAATCTGAGCTTTTCAGACAATACTGTTGTGTGATGTTTAATAATGAAAGCAGCTCTACTTCTGATGACTTCATTCATGCTGTGGAGGTTTTGTTGGTACAGTGAGTCCAGTTTCTGGAGTTCTATGTATGTATATCATTCTCACTGATGTATACTTTGTTAAGATAggacaatataaaaatacaactaTTTGTATCATATATACGGatgtatttaaacaaacattCACATTTCATTTAGCACGAACATGTTAAATATACCAAAAGTGattatattttacacatttatacataatatttttctgGGTTATAGACAGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024938 True 807 lncRNA 0.45 2 33145594 33162478

Neighbor

gene id symbol gene type direction distance location
XLOC_012228 NA coding downstream 7218 33133819 ~ 33138376 (-)
XLOC_012227 prox1a coding downstream 279806 32822588 ~ 32865788 (-)
XLOC_012226 smyd2a coding downstream 366038 32745763 ~ 32779556 (-)
XLOC_012225 cenpf coding downstream 402345 32720413 ~ 32743249 (-)
XLOC_012224 kcnk2a coding downstream 447077 32657202 ~ 32698517 (-)
XLOC_012230 AL590149.1 coding upstream 44302 33206780 ~ 33231714 (-)
XLOC_012231 efr3ba coding upstream 70270 33232748 ~ 33289349 (-)
XLOC_012232 ccdc28a coding upstream 226421 33388899 ~ 33416020 (-)
XLOC_012233 CR628327.1 coding upstream 255784 33418262 ~ 33460893 (-)
XLOC_012234 tmem121aa coding upstream 339288 33501766 ~ 33552363 (-)
XLOC_012219 CR407546.1 non-coding downstream 899339 32246129 ~ 32246255 (-)
XLOC_012218 NA non-coding downstream 1009466 32127897 ~ 32136128 (-)
XLOC_012208 BX539317.1 non-coding downstream 1761046 31384434 ~ 31384548 (-)
XLOC_012203 BX571712.2 non-coding downstream 1960351 31181950 ~ 31185243 (-)
XLOC_012235 NA non-coding upstream 402404 33564882 ~ 33571806 (-)
XLOC_012237 NA non-coding upstream 1498920 34661398 ~ 34691556 (-)
XLOC_012238 NA non-coding upstream 1544301 34706779 ~ 34805758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G120771 NA non-coding NC_056715.1 CM032084.1 13170336 ~ 13171035 (+)