XLOC_012241 (itgb1bp1)


Basic Information

Item Value
gene id XLOC_012241
gene name itgb1bp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 35225614 ~ 35238359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024123
GAGCCGTACAGGAAGTGAAGTGTCAACGCGAGTCTCGCCAAAACACAAGAGAACGAGAGAGAGGGAGTGCTGTTGATGGTCGCTTTGATGAACCTACTTATTAATAACTCTCACAGCCCTACACCGCTGCATATTGAACTCAGAACAGAGAGTCTGCTGGCATCTGCTGGTAggctggagaactgcagcgctGGCGTCATGGTGAAGGATGTTTCGAAAGGTCAAGAAGCgccacagcagcagcagctcccAGAGCAGTGAGATCAGCACCAAGAGCAAGTCGGTAGATTCCAGTTTGGGAGGCCTGTCTAGGTCGAGCACAGTCGCCAGCCTTGATACAGACTCCACCAAGAGCTCAGGTAACGCTGTGTCTGATGCCAGTGCGGAGTTCAGAGTCAAGTATGTGGGAGCCATCGAGAAGCTGCAGTTTGACATGAGCAAAACCCTGCAGGAGCCGCTGGACCTTATCAACTACATTGATGCAGCTCAGCAAGATGGAAAACTGCCGTTTGTGCCTGGAGACGAGGAGATGATTCTGGGAGTTTCCAAGTATGGAGTTAAAGTGGCCTCTTTGGACCAGTGTGATGTGCTCCACCGTCACCCGCTCTACCTGATTGTCCGTATGCTCTGCTATGATGATGGTCTGGGTGCTGGAAAAAACCTGCTGGCACTGAAGACCACCGATACCAAGCAGCAGGAGTGCAGCATCTGGGTGTATCAGTGCAGCAGTGCGGAACATGCCCAGGCCATCTGTAAAGTTCTGTCCAGCTCCTTTGACTGTGCCCTGGCCTCAGAGAAGCCCTGATGTGTGTTCGGGATGCTCCACCTTCAGAAGGACGTCTGCTTGTGAAGGTGCcctttttttaaacagatctgACACAAATGCTGGAATTTGTCTCACGTTGATTTAATGTTAGTGCTGCCGTTCGTTCGGCTTCTCATCCACTTGTTTA
>TCONS_00024124
AGAGAACGAGAGAGAGGGAGTGCTGTTGATGGTCGCTTTGATGAACCTACTTATTAATAACTCTCACAGCCCTACACCGCTGCATATTGAACTCAGAACAGAGAGTCTGCTGGCATCTGCTGGTAggctggagaactgcagcgctGGCGTCATGGTGAAGGATGTTTCGAAAGGTCAAGAAGCgccacagcagcagcagctcccAGAGCAGTGAGATCAGCACCAAGAGCAAGTCGGTAGATTCCAGTTTGGGAGGCCTGTCTAGGTCGAGCACAGTCGCCAGCCTTGATACAGACTCCACCAAGAGCTCAGGTAACGCTGTGTCTGATGCCAGTGCGGAGTTCAGAGTCAAGTATGTGGGAGCCATCGAGAAGCTGCAGTTTGACATGAGCAAAACCCTGCAGGAGCCGCTGGACCTTATCAACTACATTGATGCAGCTCAGGTGAGTATGTTTAGTTTCATTCATTAACGtgggactttttttattttgtacgcATCCGAGAACttcttttaaaaccaaaatgtaccttttttaATGGTGTTGTTATGGTTACATCTTGCATTTACACCACATCTGCATCTTTGGCCTGTGAAAACCCTGTATATGAAAAGCTCTCCTGTACACATCTGGTAAATTCATCATGTTTTGCTAATGGTACAGATTGCAACCTCACCCAATGTGGTATTAAAAATGGTTAGGTAAGGAACAGTGGAATGGCCCCAAAAGAGTACCACATGTACAGTACCATGCAGTGGAAAATGCTCCTTAATATCCCACTAAATGCACATTTATAGACGTTATTTCATGTCATTCAGTATTTCATACCATGCTTTGTGTCTGAATCCatttaaaaatttgtttgttCCTTTATTCACTCTAAAGCAAGATGGAAAACTGCCGTTTGTG

Function

symbol description
itgb1bp1 Predicted to act upstream of or within integrin-mediated signaling pathway. Orthologous to human ITGB1BP1 (integrin subunit beta 1 binding protein 1).

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-051113-264 Predicted to act upstream of or within integrin-mediated signaling pathway. Orthologous to human ITGB1BP1 (integrin subunit beta 1 binding protein 1).

Ensembl:

ensembl_id ENSDARG00000007169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024123 False 953 mRNA 0.52 7 35225614 35238359
TCONS_00024124 True 908 processed_transcript 0.44 4 35228588 35238312

Neighbor

gene id symbol gene type direction distance location
XLOC_012240 mboat2a coding downstream 148884 34969123 ~ 35076730 (-)
XLOC_012239 kidins220a coding downstream 262039 34809643 ~ 34963575 (-)
XLOC_012238 NA coding downstream 419856 34706779 ~ 34805758 (-)
XLOC_012237 NA coding downstream 534058 34661398 ~ 34691556 (-)
XLOC_012236 si:dkey-84k17.2 coding downstream 1508926 33688220 ~ 33716688 (-)
XLOC_012242 adam17a coding upstream 9138 35247497 ~ 35279422 (-)
XLOC_012243 rnf144aa coding upstream 47517 35285876 ~ 35352690 (-)
XLOC_012244 rsad2 coding upstream 119092 35357451 ~ 35361322 (-)
XLOC_012245 BX255944.2 coding upstream 316212 35554571 ~ 35846256 (-)
XLOC_012246 BX255944.1 coding upstream 379627 35617986 ~ 35618104 (-)
XLOC_012235 NA non-coding downstream 1653808 33564882 ~ 33571806 (-)
XLOC_012233 CR628327.1 non-coding downstream 1764721 33418262 ~ 33460893 (-)
XLOC_012230 AL590149.1 non-coding downstream 1993900 33206780 ~ 33231714 (-)
XLOC_012248 AL929378.2 non-coding upstream 662706 35901065 ~ 36340579 (-)
XLOC_012249 NA non-coding upstream 1208155 36446514 ~ 36476734 (-)
XLOC_012250 NA non-coding upstream 1244228 36482587 ~ 36513936 (-)

Expression


Co-expression Network