XLOC_012286 (pimr60)


Basic Information

Item Value
gene id XLOC_012286
gene name pimr60
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 39768680 ~ 39772999 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024193
TGTTGATTGAGGAGAGGCGAATTTCTGAGGCATTTGCTGAGGATTACTGTGCTGATACTGCGATTCTTCAAGGAGACCAGAGAATTTCTGACAGAAGACTTTTATTTCACAAGGAGATCGACGCTCAGAGCTGAAATTATTCCTTTTCACACGTTTTGTtgctcttttgttgtgtttattttgattttgatcttgtttttatcgtttttattgacatttttattgatatttgatctttgttcttgttttcagGTTTGCTGGAGTTTGGAGGAGTTTGTCAGATGGGTGAAAACCGCAgccgctccagatccaggagttctgctttcatccaggcaGCTGTTCAGGACGTCAGGACAcatgatggtgatggtgaaacCCAGACCGTGAGCCAAGAGCTTGATGGACCTCTGCCTTCCCTGTTGGCCAAATCTGTGTCCACAGATCAGGGTAACAGGAAGAGGAAGCGGCAGAGCGGCAGCCAGCAAACACCAGAAGATGAACGTCCGTCCACCTCATCTAGAAGAGCTctcaaacgctctcgcagagACGCGTATGCAAAGGGCCCACTGCTGGGAGACGGTGGATTTGGCTCTGTGTTCGCTGGGATGCGCAGGTCcgatggactgccaGTCGCCATCAAGTATGTGTCTAAAGAGCGGACACAGAGGAGACTGAGAGTTGaaggtcagggtcggctgccgctggaggtggcactGATGACCCGCGTCAAttcagctcctgcctgccccaaCGTCCTGCAGCTGCTtgactggtttgaccgtcccagacgctacatcctgatcctggagcgtcCGGATCCCTGCCAAGAcctccagagcttctgtgaggagaacggctgtctggatgagcgtctggccaagaaagtgctggtgcagctgatcgcggctctgaaacactgcgagagccgcggagtcctgcaccgggacgtcaagccagagaacctgctgatctccacagagtcccaggacatcaagctgctggacttcggctgtggagatctgctcaagcgctcggcctacaaatacttcgCAGGAACTATTCAATACGCTCCACCTGAGTGGTTCTGCAGACAGCGCTACCATGCGGGTCCAGCTACGGTGTGGTCAGTAGGAGTGACCCTCTTCAACATCCTGTGCAACCGTTTCCCCTTCGGAGGTGCACTgagggtcacgtccagaagcAAACTGACCTTCCCCATAACtctgtcaacagAGGCAGTAGACGCAGATGGAGAAGAGGAGAACACACACcgaacacacactgaacagcagATTCCAGCAGAAAACACACTCTGATGCAGGTGATGTGGAGGTGCTGTTAAACCGTTCAGCACAAGGAGACTCTTGCTCTAAAATGAACAACAGGCCATTATTAAagtgaatatatatttagttattatattcattttattttatctttactgattacacacaataatgaaaaatatgagtTTAACACTGATGAATTTGCTAAAAGTGGTTGGAAAATCAGAAGTTAAAGATTCTAATATTAAATACACTATAAATCAtcgttttacaaaatataatgaatttgctgttaatttaatttaaagtattattagaaactaagatacactttaaaaactaattataaacacttattttactaatatactttattaaatatacaatttttcTGTATTTGAAGTTGGACTATGGCTGCAGGATTGTGTTGCTTAATTATTTGCAGGACTTTGcattaattatcgataaaattcattcaaataatattaaaataataaaactttaggtAAACATGTAAACTTATCATTAAAGCACAGCTATATTATGAAGAGATAAACT

Function

symbol description
pimr60 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131122-86 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000070627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024193 True 1844 mRNA 0.44 7 39768680 39772999

Neighbor

gene id symbol gene type direction distance location
XLOC_012285 gpr132a coding downstream 7594 39760145 ~ 39761086 (-)
XLOC_012284 BX469926.1 coding downstream 126882 39641681 ~ 39641798 (-)
XLOC_012282 NA coding downstream 221193 39500572 ~ 39547487 (-)
XLOC_012283 BX469913.2 coding downstream 236751 39531815 ~ 39531929 (-)
XLOC_012281 BX571670.1 coding downstream 618997 39149567 ~ 39149683 (-)
XLOC_012287 pimr61 coding upstream 3297 39776296 ~ 39779906 (-)
XLOC_012288 pimr62 coding upstream 10269 39783268 ~ 39786222 (-)
XLOC_012289 NA coding upstream 91882 39864881 ~ 39866039 (-)
XLOC_012290 prph2la coding upstream 100585 39873584 ~ 39886628 (-)
XLOC_012291 NA coding upstream 236377 40009376 ~ 40022249 (-)
XLOC_012280 BX511307.1 non-coding downstream 781265 38987296 ~ 38987415 (-)
XLOC_012294 NA non-coding upstream 943917 40716916 ~ 40718108 (-)
XLOC_012295 NA non-coding upstream 945916 40718915 ~ 40719383 (-)
XLOC_012296 NA non-coding upstream 956232 40729231 ~ 40739941 (-)

Expression


Co-expression Network