G398616


Basic Information

Item Value
gene id G398616
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000244
NCBI id null
chromosome length 62968
location 30714 ~ 33396 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU457228
CTGGACTGAACTGAGATCCTGTTTTCTATCTTTACCCCTCATTTCTGGTGGATGATCCATAGACCAGTTACTGTTCATGGACAAACAGCTGGCCTCTGGTGAATCTGATCTCTTCTGCTGGACTGAACTGAGATTCGTCTGTGTCTCTCCATCCTTAAATTCGAGTGGATGATCCATAGACCATTCACTCTTCATGGACACACAGCTGGGCTCTGGTGAATCTGATCTGTCAAGCGGGACTGAACTGCATCCTGGAGAAAAATCTCCATCTTTGATTTTTTGTACATGACTCATTCTGTCCGCATGGAGCTGCACTGGTGCATCTGATATGTCTGATCTCCTCCACTGACTATTTTTCTGTTATGGCAGTGTGACGCAGTTACTTTGAGATTAAATGGCTCCTACAGTACTTTCACTTTGCTGGTTTGTAACACCGATGATCAGCGGTTTGTAATATCAAAGACTAGGGATTTTGGTAATATCAACATGGAAGAAACCATTTCATCGTCAGTGTTTTTTCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU457228 True 523 lncRNA 0.44 5 30714 33396

Neighbor

gene id symbol gene type direction distance location
CI01000244_00049224_00062275 GRIK1B, GRIK1, GRIK2 coding upstream 15814 49210 ~ 62275 (-)
G398599 NA non-coding downstream 1901 24904 ~ 28813 (-)
G398601 NA non-coding downstream 9040 19887 ~ 21674 (-)

Expression


Co-expression Network