CI01000299_01049508_01055558


Basic Information

Item Value
gene id CI01000299_01049508_01055558
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1049390 ~ 1055736 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_01049508_01055558.mRNA
TTATAAAAAAGCTCACTATGTTTTCAAATGTTAGTTACAAAATTGCAGCATGTGTAGCAATCTTAGTTGCCAAGAATAAAATGCAAATATGGGACTACGGCATCTCTCTTCAGAGTAAATGGGTCGAAGAGGCCTGGGAAAGGTAATCGGGGGTAACGGCACTTCCCCACTGTCCCACCACACGCACAGCCCTGAGGAAACGGGAGCTAAGGGAGCCGAGGGAGAGCAGGGCACTGGAGTGCGGTGTCTGTGGGAGCGAGCTCTGAACTCTTCCAGAAGCACCTTGATATTCCTTGCTGGGGATATGTGTATATCACCACAGGAAATTCAATTTCAGCTTCTGGGGCGAAATGAAACATCACTGAGGGCCGCCGCCGAGCTGAGCCGAGATGTGGGGCCTGGAGGTGGTTGGTTATTTATCACCGTTACCTCTGGTGGGCCGAGTGCTAAAAGCGGTGGCCTGAGCAGCAGCCGGGAAACTGCCTCACCTCGTCCTGTCAGCGTTTACTGGTGGACGATAACCCGTCCTGCAGGGCGTCCCGGCCCCGCCCCACCTCTCCTCTTGAAATATGGTCCCACCTGCCATCTGGCAGCGCTGACAGCGGATGACAGTTCGGAGGAAATACCACCGGGGATGAATTTATGGGAGTGTTGGGGCGATGACAGGCCAGGTGAGAGCAGCGAGGAGATGGATTGGATTTTTCCCCAGCGTGCAGAGGAGAGGGAAACAGGAGGATGCTACGGATCTAGAAACAGCTGGCCTGTCACTTATAAAGCTGTTTATGGTGAGCGGGAAAAATGCCAACAGAGACCACCACTATAAAAAAGTCATTAATTACACAGGCGGAAACCATGACACGAGTAGCTTCATCTGCATACATGTGGTCACACACACATTTTTTCAGAAAGTGTTCAGTTTATATAATGCAACTAAGGATTTCCCAAACGTCAATAGTAGTTTGTTATAGCATAAAAGACATGCCAATGGTGAACTGAACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_01049508_01055558.mRNA True 1001 mRNA 0.50 4 1049390 1055736

Neighbor

gene id symbol gene type direction distance location
CI01000299_01036243_01046776 NA coding upstream 1787 1035037 ~ 1047603 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding upstream 137418 862803 ~ 911972 (+)
CI01000299_00826470_00828773 NA coding upstream 220430 826433 ~ 828960 (+)
CI01000299_00795673_00796901 GPC6 coding upstream 252233 795673 ~ 797157 (+)
CI01000299_00689032_00727635 NA coding upstream 321554 688906 ~ 727836 (+)
CI01000299_01139684_01147241 NA coding downstream 83761 1139497 ~ 1147248 (+)
CI01000299_01197545_01215711 NA coding downstream 141686 1197422 ~ 1215989 (+)
CI01000299_01855614_01858092 SLITRK6 coding downstream 799878 1855614 ~ 1858703 (+)
CI01000299_02118245_02120332 SLITRK1 coding downstream 1061125 2116861 ~ 2121858 (+)
CI01000299_02195854_02198465 NA coding downstream 1140062 2195798 ~ 2198925 (+)
G404016 NA non-coding upstream 399576 649415 ~ 649814 (+)
G403971 NA non-coding upstream 445807 602832 ~ 603583 (+)
G403965 NA non-coding upstream 466267 582756 ~ 583123 (+)
G403952 NA non-coding upstream 498648 550501 ~ 550742 (+)
G403595 NA non-coding upstream 886595 60419 ~ 162795 (+)
G404137 NA non-coding downstream 14872 1070608 ~ 1075893 (+)
G404074 NA non-coding downstream 67843 1123579 ~ 1125274 (+)
G404075 NA non-coding downstream 70004 1125740 ~ 1127444 (+)
G404385 NA non-coding downstream 85620 1141356 ~ 1141636 (+)
G404424 NA non-coding downstream 139741 1195477 ~ 1195736 (+)
G403972 NA other upstream 443040 604870 ~ 606350 (+)
G403609 NA other upstream 638602 364139 ~ 410788 (+)
G403578 NA other upstream 977119 35462 ~ 72271 (+)
G405609 NA other downstream 2098861 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3075522 4131060 ~ 4133941 (+)
G405842 NA other downstream 3239797 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3434082 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3646646 4703071 ~ 4704780 (+)

Expression


Co-expression Network